Glyma10g07560 - SoyBase

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Report for Sequence Feature Glyma10g07560

Feature Type:	gene_model
Chromosome:	Gm10
Start:	6261635
stop:	6268763
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03760	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein \| chr5:985910-990087 REVERSE LENGTH=533	SoyBase	E_val: 0	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009294	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0051753	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mannan synthase activity	SoyBase	N/A	ISS
PTHR10587	Panther	N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED	JGI		ISS
PTHR10587:SF34	Panther	MANNAN SYNTHASE	JGI		ISS
PF00535	PFAM	Glycosyl transferase family 2	JGI		ISS
UniRef100_E4MX95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-17-G12 n=1 Tax=Eutrema halophilum RepID=E4MX95_THEHA	SoyBase	E_val: 0	ISS
UniRef100_I1L972	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L972_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07560

Paralog	Evidence	Comments
Glyma13g21440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g065600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g07560

Limit To All Plant Sequences

>Glyma10g07560.1   sequence type=CDS   gene model=Glyma10g07560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCATTTCAAGGTTCAAGGGATGACATTTCCTACCAAATGGGTTTGATTTGGAGCCAAGTGAAGGAGCCAGTGATCGTGCCAATGCTGAGGGTGTCAGTGTTTCTGTGCTTGGCCATGTCGTTGATGATGCTGGTCGAGAGGGTGTACATGGGCATTGTCATTTGCTTGGTGAAGCTGTTTGGTCGAAGACCCGAGAAGCGTTACAAGTGGGAGCCTATGAAGGACGATGTTGAGTTGGGAAACTCTAGTTATCCCATGGTCTTGGTCCAAGTCCCAATGTACAACGAAAGAGAGGTTTATCAACTATCAATTGGTGCAGCTTGTGGTCTTTCTTGGCCTTCAGACAGAATCATCATACAAGTTCTTGATGATTCTACTAACCCAACAATCAAGGAGCTGGTGCAAATGGAATGTAGTAGATGGGCGAGCAAAGGGGTGAACATAAAGTACGAGGTGAGGGACAACAGAGACGGGTACAAAGCAGGGGCTCTGAAAGAAGGCATGAAACGGAACTACGTGAAGCAATGTGACTATGTTGCCATCTTTGACGCGGATTTTCAACCGGACCCTGATTTCCTCTGGCGAACTGTCCCATTCCTTGTCAACAACCCTGAACTTGCTCTTGTTCAGGCACGTTGGAAGTTTGTGAATGCCAATGAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTGCACTTATGCCTTCTTTGGCTTCAACGGAACTGCTGGTGTATGGAGAATTTCGGCGCTGTATGAGTCTGGAGGGTGGAATCATAGGACCACAGTGGAAGATATGGACCTGGCTGTGCGAGCCAGTCTCAGAGGATGGAAATTCTTGTACCTGCCCAATTTGAAGGTTAAAAACGAATTACCAAGTACTTTGAATGCCTACCGTTTCCAACAGCACAGGTGGTCTTGTGGACCAGCCAATCTTTTCATGAAAATGTTCATGGAGATTATGAGAAACAGGAAAGTGTCCTTGTATAAGAAGATATATGTTATTTACAGCTTCTTCTTTGTCCGGAAGGTCGTGGCCCACATCAACACTTTTATGTTCTATTGCATTGTGTTACCCGCTACAGTTGTGGTGCCTGAGGTGGTTGTCCCCAAGTGGGGTGCTGTTTACATCCCTTCCATCATCACACTCCTAAATGCTGTTGGAACTCCAAGGTCACTCCACTTGCTGGTCTTCTGGATTCTCTTTGAGAATACCATGTCTCTGCATCGAACAAAGGCAACAATTATTGGTCTGCTAGAGGGTAGTCGAGCGAATGAATGGATTGTCACTCAAAAGGGTAAACCACCCAAAAGTCGGTTCAGGATAAGGATTCATCATATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATATTATGTTCGGGAAAAACCGCTACTACATATTCCTATACATTCAATCAATTGCTTTCTTCATCATGGCCTTTGGATATGTTGGCATTTTCGATCCCAACTCCTAG

Predicted protein sequences of Glyma10g07560

Limit To All Plant Sequences

>Glyma10g07560.1   sequence type=predicted peptide   gene model=Glyma10g07560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESFQGSRDDISYQMGLIWSQVKEPVIVPMLRVSVFLCLAMSLMMLVERVYMGIVICLVKLFGRRPEKRYKWEPMKDDVELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTNPTIKELVQMECSRWASKGVNIKYEVRDNRDGYKAGALKEGMKRNYVKQCDYVAIFDADFQPDPDFLWRTVPFLVNNPELALVQARWKFVNANECLMTRMQEMSLDYHFTVEQEVGSCTYAFFGFNGTAGVWRISALYESGGWNHRTTVEDMDLAVRASLRGWKFLYLPNLKVKNELPSTLNAYRFQQHRWSCGPANLFMKMFMEIMRNRKVSLYKKIYVIYSFFFVRKVVAHINTFMFYCIVLPATVVVPEVVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENTMSLHRTKATIIGLLEGSRANEWIVTQKGKPPKSRFRIRIHHMLELLVGFYLFFCGCYDIMFGKNRYYIFLYIQSIAFFIMAFGYVGIFDPNS*

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