Glyma10g07530 - SoyBase

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Report for Sequence Feature Glyma10g07530

Feature Type:	gene_model
Chromosome:	Gm10
Start:	6218647
stop:	6221625
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04550	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF668) \| chr5:1303757-1305556 REVERSE LENGTH=599	SoyBase	E_val: 1.00E-110	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05003	PFAM	Protein of unknown function (DUF668)	JGI		ISS
PF11961	PFAM	Domain of unknown function (DUF3475)	JGI		ISS
UniRef100_Q9LZ71	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g04550/T32M21_140 n=1 Tax=Arabidopsis thaliana RepID=Q9LZ71_ARATH	SoyBase	E_val: 5.00E-108	ISS
UniRef100_UPI000233CE07	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CE07 related cluster n=1 Tax=unknown RepID=UPI000233CE07	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g07530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g065400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g07530

Limit To All Plant Sequences

>Glyma10g07530.3   sequence type=transcript   gene model=Glyma10g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTCTTTGTCTATTTCCTTATCCTTTTCTCATATCAGTAAGCATCCGTTCATTATGGTTTCAGCTGGTATTTCCACTTTTCTCCTTGCAGAGGTTCAGTTTCTTCTCCCTCAGCTCAATGCTGCCTCAGATTTGTGGAGGGATAGTGGGTATCTTCTAAGAGTGCTAATTAGGATAACGTACCTATTGAACTATGGGGGGTGAAACAGTGAATGGGACATGGCTCAGTGCTTTTTGGTCAGTGTCACGTAAGAGTGCATCAGATGGCAAGGAAGTGATTGGAGTTTTGGCATTTGAAGTTGCGGGTTTGATGTCTAAGGTGGTTAATTTGTGGCGTTCTTTGAGTGACAGGGAAATAATGAATACGAAGGCATGGATAATGAAGTCGGTTGGGGTCAAAATGCTAGTGTCTGATGATGATTATTTCTTGATGGACCTTGCCTTGTGTGAGATACTCAATAACTTCGAGTCTCTAGCTTGGTCTGTGGCCAGGTTGAGTAAGAAGTGCAAGGGTCCAGTTTATCATGGTTATGAACATTTTGTTGATAATCCTGCTCAAAACTATCTTCAATGGTCCGGGTGGGAATATGCGTGGAAAAAGATGGAGAGGAAGGTGAAGAAAATGGACAGATTTGTTGCTTGTATGTCACTATTGTCCCAAGAGCTTGAGGTACTGGCTGATAGGGAACAAACTTTCAGGAGAATGAAGGCAAATCGCGAGCTTCATGGGGTGAAGCTGCTCGAGTTTCAAAAGAAGGTCATGTGGCAGCGCCAGCAAGTGAAAAATCTGAGAGACATGGCTCCGTGGAACAGAAGTTATGACTATGTTGTAAGGTTATTGGCAAGATCATTGTTCACAATTCTTGAGAGAATCATTGTTGTCTTTGGAAATAGTCATATACCTATTGAAAACCAACAAAATGATTCTCTTTCTCCGCCCGTGACTACCAATAACAATCGTCTTACTCGCAGTCATTCCTTCTCTACTCTTAGGCACACCACCTCAGTTCATCCTTCTAAGACCAATTCATATGGATTCTGTTCACAACCTATTGAGAGCAAGTCAGTGTTAAACTCAGGTTTTGAGGTTGACAAGAGCAAGAGCAAGAAAAAGAAGAAAGAGCAACAAGTGCTTCATTCAGAAAGCAAGCAGTTCGAGCATATTGTTCCATTCACTGGATTCATGTCAGTTGGAAATAAATCTCCTTTTGTACAATCTTGTGTGCCAACTAAAGGAGGTTCTATGAGGTTGGTTGATTGTCATGTGAAGAACAATGACAACATGAAAACAGTTGATAAATCATCTCTCATATGCAGAACTAGAATTTATTTAAAACTGTCGATGAAGGGTCGGTTAAAGCCAGGTCCATCTACACTTGGCGATGCAGCTTTAGCTCTACATTATGCAAATGTGATTGTACTAATAGAGAAGATGGTGGTGTCAGCACCTCACCTCATTGATCATGAAACAAGGGATGATTTGTACAACATGTTACCAACCACTATAAGAACCGCTCTGAGGGGTAAGCTCAAGTGGTATGCCAAGAGCCAGCGTGCCACGGTCCACGAAGCTAGCCTTGCAGTGGAATGGAGCATGGTAGTTGCACAGATATTGGAATGGTTGGCTCCACTGGCACACAACATGATAAAGTGGCATTCTGAGAGGAATTTTGAGAGGGAGCAATGTGCTTCCAAAGCCAAAAATGTTTTGCTTGTTCACACTCTTTACTTTGCAGACCAAGCAAAAGCTGAAGCTGCAATGGTTGAGCTCCTTGTTGGTGTTCACTATGTGTGCAGGATTGATAGAGAGGCGCAGGAGTTTGCAGGGTCTAGAGCTCTTAATGGTGTTCGTTTGAGAAAGAATGTGTTGTACAATAAATATTTATAGGCTACATGAATGTCACCAATGATGTACAGTTATCATTTTCTAATGTAGCCTTTTCCTAATAGTACTTTAATGCTTTTAATGTTAAAAATACGCTGGGAATCACATCACGCTGATTCTGAGCTTTGGTTACATTTTGGTTAATTGATATTGCAGATTAGAAATATTAGATGAT

Coding sequences of Glyma10g07530

Limit To All Plant Sequences

>Glyma10g07530.2   sequence type=CDS   gene model=Glyma10g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGTGAAACAGTGAATGGGACATGGCTCAGTGCTTTTTGGTCAGTGTCACGTAAGAGTGCATCAGATGGCAAGGAAGTGATTGGAGTTTTGGCATTTGAAGTTGCGGGTTTGATGTCTAAGGTGGTTAATTTGTGGCGTTCTTTGAGTGACAGGGAAATAATGAATACGAAGGCATGGATAATGAAGTCGGTTGGGGTCAAAATGCTAGTGTCTGATGATGATTATTTCTTGATGGACCTTGCCTTGTGTGAGATACTCAATAACTTCGAGTCTCTAGCTTGGTCTGTGGCCAGGTTGAGTAAGAAGTGCAAGGGTCCAGTTTATCATGGTTATGAACATTTTGTTGATAATCCTGCTCAAAACTATCTTCAATGGTCCGGGTGGGAATATGCGTGGAAAAAGATGGAGAGGAAGGTGAAGAAAATGGACAGATTTGTTGCTTGTATGTCACTATTGTCCCAAGAGCTTGAGGTACTGGCTGATAGGGAACAAACTTTCAGGAGAATGAAGGCAAATCGCGAGCTTCATGGGGTGAAGCTGCTCGAGTTTCAAAAGAAGGTCATGTGGCAGCGCCAGCAAGTGAAAAATCTGAGAGACATGGCTCCGTGGAACAGAAGTTATGACTATGTTGTAAGGTTATTGGCAAGATCATTGTTCACAATTCTTGAGAGAATCATTGTTGTCTTTGGAAATAGTCATATACCTATTGAAAACCAACAAAATGATTCTCTTTCTCCGCCCGTGACTACCAATAACAATCGTCTTACTCGCAGTCATTCCTTCTCTACTCTTAGGCACACCACCTCAGTTCATCCTTCTAAGACCAATTCATATGGATTCTGTTCACAACCTATTGAGAGCAAGTCAGTGTTAAACTCAGGTTTTGAGGTTGACAAGAGCAAGAGCAAGAAAAAGAAGAAAGAGCAACAAGTGCTTCATTCAGAAAGCAAGCAGTTCGAGCATATTGTTCCATTCACTGGATTCATGTCAGTTGGAAATAAATCTCCTTTTGTACAATCTTGTGTGCCAACTAAAGGAGGTTCTATGAGGTTGGTTGATTGTCATGTGAAGAACAATGACAACATGAAAACAGTTGATAAATCATCTCTCATATGCAGAACTAGAATTTATTTAAAACTGTCGATGAAGGGTCGGTTAAAGCCAGGTCCATCTACACTTGGCGATGCAGCTTTAGCTCTACATTATGCAAATGTGATTGTACTAATAGAGAAGATGGTGGTGTCAGCACCTCACCTCATTGATCATGAAACAAGGGATGATTTGTACAACATGTTACCAACCACTATAAGAACCGCTCTGAGGGGTAAGCTCAAGTGGTATGCCAAGAGCCAGCGTGCCACGGTCCACGAAGCTAGCCTTGCAGTGGAATGGAGCATGGTAGTTGCACAGATATTGGAATGGTTGGCTCCACTGGCACACAACATGATAAAGTGGCATTCTGAGAGGAATTTTGAGAGGGAGCAATGTGCTTCCAAAGCCAAAAATGTTTTGCTTGTTCACACTCTTTACTTTGCAGACCAAGCAAAAGCTGAAGCTGCAATGGTTGAGCTCCTTGTTGGTGTTCACTATGTGTGCAGGATTGATAGAGAGGCGCAGGAGTTTGCAGGGTCTAGAGCTCTTAATGGTGTTCGTTTGAGAAAGAATGTGTTGTACAATAAATATTTATAG

>Glyma10g07530.3   sequence type=CDS   gene model=Glyma10g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGTGAAACAGTGAATGGGACATGGCTCAGTGCTTTTTGGTCAGTGTCACGTAAGAGTGCATCAGATGGCAAGGAAGTGATTGGAGTTTTGGCATTTGAAGTTGCGGGTTTGATGTCTAAGGTGGTTAATTTGTGGCGTTCTTTGAGTGACAGGGAAATAATGAATACGAAGGCATGGATAATGAAGTCGGTTGGGGTCAAAATGCTAGTGTCTGATGATGATTATTTCTTGATGGACCTTGCCTTGTGTGAGATACTCAATAACTTCGAGTCTCTAGCTTGGTCTGTGGCCAGGTTGAGTAAGAAGTGCAAGGGTCCAGTTTATCATGGTTATGAACATTTTGTTGATAATCCTGCTCAAAACTATCTTCAATGGTCCGGGTGGGAATATGCGTGGAAAAAGATGGAGAGGAAGGTGAAGAAAATGGACAGATTTGTTGCTTGTATGTCACTATTGTCCCAAGAGCTTGAGGTACTGGCTGATAGGGAACAAACTTTCAGGAGAATGAAGGCAAATCGCGAGCTTCATGGGGTGAAGCTGCTCGAGTTTCAAAAGAAGGTCATGTGGCAGCGCCAGCAAGTGAAAAATCTGAGAGACATGGCTCCGTGGAACAGAAGTTATGACTATGTTGTAAGGTTATTGGCAAGATCATTGTTCACAATTCTTGAGAGAATCATTGTTGTCTTTGGAAATAGTCATATACCTATTGAAAACCAACAAAATGATTCTCTTTCTCCGCCCGTGACTACCAATAACAATCGTCTTACTCGCAGTCATTCCTTCTCTACTCTTAGGCACACCACCTCAGTTCATCCTTCTAAGACCAATTCATATGGATTCTGTTCACAACCTATTGAGAGCAAGTCAGTGTTAAACTCAGGTTTTGAGGTTGACAAGAGCAAGAGCAAGAAAAAGAAGAAAGAGCAACAAGTGCTTCATTCAGAAAGCAAGCAGTTCGAGCATATTGTTCCATTCACTGGATTCATGTCAGTTGGAAATAAATCTCCTTTTGTACAATCTTGTGTGCCAACTAAAGGAGGTTCTATGAGGTTGGTTGATTGTCATGTGAAGAACAATGACAACATGAAAACAGTTGATAAATCATCTCTCATATGCAGAACTAGAATTTATTTAAAACTGTCGATGAAGGGTCGGTTAAAGCCAGGTCCATCTACACTTGGCGATGCAGCTTTAGCTCTACATTATGCAAATGTGATTGTACTAATAGAGAAGATGGTGGTGTCAGCACCTCACCTCATTGATCATGAAACAAGGGATGATTTGTACAACATGTTACCAACCACTATAAGAACCGCTCTGAGGGGTAAGCTCAAGTGGTATGCCAAGAGCCAGCGTGCCACGGTCCACGAAGCTAGCCTTGCAGTGGAATGGAGCATGGTAGTTGCACAGATATTGGAATGGTTGGCTCCACTGGCACACAACATGATAAAGTGGCATTCTGAGAGGAATTTTGAGAGGGAGCAATGTGCTTCCAAAGCCAAAAATGTTTTGCTTGTTCACACTCTTTACTTTGCAGACCAAGCAAAAGCTGAAGCTGCAATGGTTGAGCTCCTTGTTGGTGTTCACTATGTGTGCAGGATTGATAGAGAGGCGCAGGAGTTTGCAGGGTCTAGAGCTCTTAATGGTGTTCGTTTGAGAAAGAATGTGTTGTACAATAAATATTTATAG

Predicted protein sequences of Glyma10g07530

Limit To All Plant Sequences

>Glyma10g07530.2   sequence type=predicted peptide   gene model=Glyma10g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGETVNGTWLSAFWSVSRKSASDGKEVIGVLAFEVAGLMSKVVNLWRSLSDREIMNTKAWIMKSVGVKMLVSDDDYFLMDLALCEILNNFESLAWSVARLSKKCKGPVYHGYEHFVDNPAQNYLQWSGWEYAWKKMERKVKKMDRFVACMSLLSQELEVLADREQTFRRMKANRELHGVKLLEFQKKVMWQRQQVKNLRDMAPWNRSYDYVVRLLARSLFTILERIIVVFGNSHIPIENQQNDSLSPPVTTNNNRLTRSHSFSTLRHTTSVHPSKTNSYGFCSQPIESKSVLNSGFEVDKSKSKKKKKEQQVLHSESKQFEHIVPFTGFMSVGNKSPFVQSCVPTKGGSMRLVDCHVKNNDNMKTVDKSSLICRTRIYLKLSMKGRLKPGPSTLGDAALALHYANVIVLIEKMVVSAPHLIDHETRDDLYNMLPTTIRTALRGKLKWYAKSQRATVHEASLAVEWSMVVAQILEWLAPLAHNMIKWHSERNFEREQCASKAKNVLLVHTLYFADQAKAEAAMVELLVGVHYVCRIDREAQEFAGSRALNGVRLRKNVLYNKYL*

>Glyma10g07530.3   sequence type=predicted peptide   gene model=Glyma10g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGETVNGTWLSAFWSVSRKSASDGKEVIGVLAFEVAGLMSKVVNLWRSLSDREIMNTKAWIMKSVGVKMLVSDDDYFLMDLALCEILNNFESLAWSVARLSKKCKGPVYHGYEHFVDNPAQNYLQWSGWEYAWKKMERKVKKMDRFVACMSLLSQELEVLADREQTFRRMKANRELHGVKLLEFQKKVMWQRQQVKNLRDMAPWNRSYDYVVRLLARSLFTILERIIVVFGNSHIPIENQQNDSLSPPVTTNNNRLTRSHSFSTLRHTTSVHPSKTNSYGFCSQPIESKSVLNSGFEVDKSKSKKKKKEQQVLHSESKQFEHIVPFTGFMSVGNKSPFVQSCVPTKGGSMRLVDCHVKNNDNMKTVDKSSLICRTRIYLKLSMKGRLKPGPSTLGDAALALHYANVIVLIEKMVVSAPHLIDHETRDDLYNMLPTTIRTALRGKLKWYAKSQRATVHEASLAVEWSMVVAQILEWLAPLAHNMIKWHSERNFEREQCASKAKNVLLVHTLYFADQAKAEAAMVELLVGVHYVCRIDREAQEFAGSRALNGVRLRKNVLYNKYL*

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