SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03770 | AT | Annotation by Michelle Graham. TAIR10: KDO transferase A | chr5:995191-997622 FORWARD LENGTH=447 | SoyBase | E_val: 0 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PTHR23417 | Panther | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE | JGI | ISS | |
| PTHR23417:SF2 | Panther | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE (KDO TRANSFERASE) | JGI | ISS | |
| PF04413 | PFAM | 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) | JGI | ISS | |
| UniRef100_G7I9B4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-deoxy-D-manno-octulosonic-acid transferase n=1 Tax=Medicago truncatula RepID=G7I9B4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CAA7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CAA7 related cluster n=1 Tax=unknown RepID=UPI000233CAA7 | SoyBase | E_val: 0 | ISS |
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Glyma10g07520 not represented in the dataset |
Glyma10g07520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g21401 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g065300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g07520.1 sequence type=CDS gene model=Glyma10g07520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAAGAAGGGGTTGGTGGTGTACAAGTTATACAGAGCCCTAACCCACGGCCTATCGCCGTTAATCCGCCTCCACCTGCGCTGGCGGCGCTTCCTCGGCCTGGAGCACCCGCACCGGTGGCTGGAGCGCCTCGGCCTCCCCTCTCAGCCCCGGCACGCGGGTCCACTCCTCTGGTTCCACGCCGTTTCCTTAGGCGAAGGAATGATCGCCGTTCCCGTCATCAAACACTGCATTCGGCGAATGCCTCACTTGAACGTGCTCATGACCATCACCACCATGTCCTCGTTTGAAGTATTGAGCAAGTCGCTTCCGAGTGGAATCATTTTACAGTTTTCACCAGTTGACACCCCTACTTCCATCCATTCTTTCCTTGATTACTGGAAACCAAATGCTATTGTGCTGATGGAAAGTGAACTCTGGCCAAATCTCATCATGGATGCTTCCAGAAATGGTATAAAACTGGCACTCTTAAATGCTCGGATGTCTGAAAAGTCCTTTAAAATTTGGTCAAGACCAGTGCTTCTACCATTAATTTCATTGATGTTATCCAAGTTTTCGTTGATTGTCCCATTGAGTACAGAGCAGGGTATCCGGTTTCAGCTGCTACAAGCCCCTCCTTATATCATAAACTTTTCTGGTGATTTAAAATATGTAATAGAAGATTTTGGAGTCAATGAAAGAGGTAGAATTGATATAGACAATCTGAGACTAGAGCTTACACAAAAGAAGGTTTGGATGGCTTCTTCCATTCATAGTGGAGAAGAAGAAATAATATTAGGTGTTCACAATGCCCTTATGCAGCAACAACCTAATACAATGACTATTATTGTCCCTCGGCATCCACAGGAAGGACGAGAGATTGCCAAAAAATTGGAGAAAGAAGGACAAAATGTCGTTTTGAGGTCTCAAAATGAGAAGTTTAAGCCTGGAACTGATATTTATGTGGTGGACACTTTGGGTGAATTAAGACTCTTGTACACATTAACACCAATAGCTGTGATTGGGGGTTCGCTACTCCCTGGTTTGTCTGGCCACAATATCTCAGAAGCTGCTGCAGCAGGCTGTGCTGTTTTGACAGGTTGTCACATTGGGCATTTCTCCCACATGGTACTGGAAATGCAACGATCAAATCCTTTGTCGGTTCATCAGGTTTCTGGAAAACTGGAGCTCGAAAAAGCTCTCATTGAGCTCTTCACCAATGCAACACTTCTGGAAGCACGCCGTAGAGCCGCTAAGGAAGCGTTTTGTCAGTTGTCCTGTGGCATTGTTGAAAATATTTGGAGTTTGCTAAATTTTCATATTTTTTGTAGGTTGTCTGCAGATGAATCCAAGAGTTTTAGACTATGA
>Glyma10g07520.1 sequence type=predicted peptide gene model=Glyma10g07520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMKKGLVVYKLYRALTHGLSPLIRLHLRWRRFLGLEHPHRWLERLGLPSQPRHAGPLLWFHAVSLGEGMIAVPVIKHCIRRMPHLNVLMTITTMSSFEVLSKSLPSGIILQFSPVDTPTSIHSFLDYWKPNAIVLMESELWPNLIMDASRNGIKLALLNARMSEKSFKIWSRPVLLPLISLMLSKFSLIVPLSTEQGIRFQLLQAPPYIINFSGDLKYVIEDFGVNERGRIDIDNLRLELTQKKVWMASSIHSGEEEIILGVHNALMQQQPNTMTIIVPRHPQEGREIAKKLEKEGQNVVLRSQNEKFKPGTDIYVVDTLGELRLLYTLTPIAVIGGSLLPGLSGHNISEAAAAGCAVLTGCHIGHFSHMVLEMQRSNPLSVHQVSGKLELEKALIELFTNATLLEARRRAAKEAFCQLSCGIVENIWSLLNFHIFCRLSADESKSFRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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