Glyma10g07490 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g07490

Feature Type:	gene_model
Chromosome:	Gm10
Start:	6195888
stop:	6201048
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10030	AT	Annotation by Michelle Graham. TAIR10: aspartate/glutamate/uridylate kinase family protein \| chr3:3092277-3094831 REVERSE LENGTH=542	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG1154	KOG	Gamma-glutamyl kinase	JGI		ISS
PTHR26059	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26059:SF1	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00696	PFAM	Amino acid kinase family	JGI		ISS
PF10545	PFAM	Alcohol dehydrogenase transcription factor Myb/SANT-like	JGI		ISS
UniRef100_A7UQU8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeodomain-like; Uridylate kinase n=1 Tax=Medicago truncatula RepID=A7UQU8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L966	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L966_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07490

Paralog	Evidence	Comments
Glyma13g21371	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g065100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g07490

Limit To All Plant Sequences

>Glyma10g07490.1   sequence type=CDS   gene model=Glyma10g07490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTTGCGACGACGACGACGACTTCTCTCTCCTCCGCGATGACACCCACCACCACCTCCACCAGCCCTACGCGCCGCACCACCACCACTTCTCCCCCTCCGCCGTCTCCGTCGCCTCCGCCTCCTCCGTGCCGCCTAAACCCGCCGCCGCCGCAGACGACGACGCCGAGGACTTCTCCAACCCCTTCGACGAAGACGACGACGGCGAGAAGCGCAAGGAGCGCGACGAGATCGGCGAGGGAGCCGCCTCGTACGGATTCAACAACAAGAGATCTAAGACGACGGCTCCGTCGAACGGCGTCGGCGCCGTATCCGGCGGCGCCGAGTACCGCAAGGACCGGGAGGAGTGGAGCGACACGGCGATTGTGTGCCTCCTCGAGGCGTACACGGAGAAGTTCACGCAGTTGAACCGGGGGAACCTGAGGGGAAGGGATTGGGAGGAGGTTGCGGCGGTGGTGAGCGAACGGTGCGAGAATCAATCAAAGAGCGTTGAACAGTGTAAAAACAAGGTCGATAACCTAAAGAAGAGGTACAAATTGGAGCGACACAGAATGAGCAGTGGCTGCATTTCCACCAGCCACTGGCCTTGGTTCAAGCAATTGGAACAGATCGTCGGAAATTCTCTCCCGGCGAAGTTCTCCGACGAGGATAAAGCGGTCATTTCAGCCGGAACTTCTCCCCGGCAATCGAAAAGATATGGAGTGGCAACACCCAGCACTGGAGGTCCAGCAAATAGCATGAAGTCCAAAGCATTGTCAAACAGTAGATGGCGGAGGGTAGTCCTCAAAATTAGTGGGGCAGCTCTTACTGGATCTGATACCTGCAATATTGACCCTAAGGTGGCAATGTTAGTTTCAAGAGAAGTTGCCATAGCTTCCCGCCTTGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGTAATTTCTTCTCTGGAGAGGCTTGGGTAAATGTGACAGGTTTAGAAAGATGTACTGCGTACCAAGTTGGCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGACATCTTGAGAAAGGAAGGGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCACTCCTCTTTTCTCAACCGACATAGCTGCAGCTCTTCGTGCTTCAGAGCTTAATGCTGAAGCAGTTCTAAAGGGTACTAATGTAGATGGTGTATACGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGAGCTAGGTTCAAGAGGTGTCACCTCTATGGATATGTCAGCGCTGACATTCTGTGAGGAAAATGCTATTCCTGTTGTGGTTTTTAATCTACTGGAGCCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA

Predicted protein sequences of Glyma10g07490

Limit To All Plant Sequences

>Glyma10g07490.1   sequence type=predicted peptide   gene model=Glyma10g07490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASCDDDDDFSLLRDDTHHHLHQPYAPHHHHFSPSAVSVASASSVPPKPAAAADDDAEDFSNPFDEDDDGEKRKERDEIGEGAASYGFNNKRSKTTAPSNGVGAVSGGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMSSGCISTSHWPWFKQLEQIVGNSLPAKFSDEDKAVISAGTSPRQSKRYGVATPSTGGPANSMKSKALSNSRWRRVVLKISGAALTGSDTCNIDPKVAMLVSREVAIASRLGVEVAIVVGGRNFFSGEAWVNVTGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSVAMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGTPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGVTSMDMSALTFCEENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAIS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain