Glyma10g07450 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g07450

Feature Type:	gene_model
Chromosome:	Gm10
Start:	6153855
stop:	6158664
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53000	AT	Annotation by Michelle Graham. TAIR10: phloem protein 2-A15 \| chr3:19654278-19655801 FORWARD LENGTH=300	SoyBase	E_val: 1.00E-162	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
UniRef100_B9SRL8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATPP2-A13, putative n=1 Tax=Ricinus communis RepID=B9SRL8_RICCO	SoyBase	E_val: 8.00E-178	ISS
UniRef100_I1L962	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L962_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07450

Paralog	Evidence	Comments
Glyma13g21340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g064800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g07450

Limit To All Plant Sequences

>Glyma10g07450.2   sequence type=transcript   gene model=Glyma10g07450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCACCCCAAACAGAAATTCCAAACTAAAAATCCCACGCAAAAGCTATCCACCAACAACAAACAACTCTTCTTACATGCAACACCAACATCACTAACGCATTTTCAATTTTCAGTATATTTTCACTCCCACGCGCGCTTACTTCCTCCCTTCCCCTCGGCGCGTGCCATGGGCGCGTCGCTGTCGTCGAACGGTTCGAGCATCGGCCCGGGCCTCGGGGACATACCGGAGAGCTGCGTGGCGTGTGTGTTCCTCCACCTGACGCCGCCGGAGATCTGCAACCTCGCCCGCCTCAACCGCGCCTTTCGCGGCGCCGCCTCGTCGGACTCTGTCTGGGAGGCGAAGCTGCCGCGCAACTACCAGGATCTGCTAGATCTCGTGCCGCCGCCGGAGCGCCATCACCGCAGCCTCTCGAAAAAGGACATATTCGCGCTCCTCTCCCGCCCCCTCCCCTTCGACCACGGCCATAAGGTGGGTGTTGCACTTCAGGAAGTGTGGCTGGACAGAGTCACCGGGAAGGTTTGCATGTCCATTTCGGCGAAGGCGATGGTGATTACCGGCATTGATGACCGGAGATACTGGAATTGGATTCCTACTGAAGAATCTAGGTTTCACACTGTGGCATATTTGCAGCAAATATGGTGGTTTGAAGTGGATGGGGAGGTTTCGTTTCCATTTCCTGCTGATATTTATACTCTCTCCTTTCGACTTCACCTTGGACGGTTTTCCAAAAGGCTAGGGCGGCGTGTTTGCAATTATGATCACACCCATGGTTGGGATATAAAACCTGTGAAATTTGAGTTTTCTACTTCAGATGGTCAGCAAGCATCATGTGAATGCTGTCTGGATGAAACTGAGATTGATGATACATATGGCAATCATAAGCGTGGATACTGGGTAGATTACAAGGTGGGCGAGTTTATTGTCAGTGGATCGGAGCCTACAACTCAAGTTAGATTTTCCATGAAACAGATCGATTGTACACATTCCAAAGGTGGGCTTTGTGTAGATGCTGTATTTATTGTACCTAGTGATTTGAGAGAGCGAAAGAGAAGAGGCATTTTGAAATAGCCATGTGCAGAATAGGAAGCTTATTTTTTTAGTGGTGTCAGACATCCTAGAATACTCACTCTATTGGGGATCTATCACACAGCAGCTTATACACTGAAAAAAGTTTACAATTTGGAGAATGTCATAATTTTCTGTTTTTTTTTTAATTTTTTAATTTTTTTTGCCAGTAGGTGTGTATTCTCTATAGCTTTGTAATTATAATTTCTATTCAATGTATTTTAGTTGTTTCCACATTAGGCTGTTAAATTTATTTGTTTCGAGGAAAAAAGAACTTTGCCCTTGCCTGCCTCGGTTGTTCTTTATGCCTTCCGAAACTTGGTTGAGTCGGTCATAAATGTTGAAACCGTGTTATATAGTACAATGTAGTTATTTTGTTTAAGGCATTATTTGATGCACTAGTAAAGATCAGTAAATATAAGGCCGGATCA

Coding sequences of Glyma10g07450

Limit To All Plant Sequences

>Glyma10g07450.1   sequence type=CDS   gene model=Glyma10g07450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGCGTCGCTGTCGTCGAACGGTTCGAGCATCGGCCCGGGCCTCGGGGACATACCGGAGAGCTGCGTGGCGTGTGTGTTCCTCCACCTGACGCCGCCGGAGATCTGCAACCTCGCCCGCCTCAACCGCGCCTTTCGCGGCGCCGCCTCGTCGGACTCTGTCTGGGAGGCGAAGCTGCCGCGCAACTACCAGGATCTGCTAGATCTCGTGCCGCCGCCGGAGCGCCATCACCGCAGCCTCTCGAAAAAGGACATATTCGCGCTCCTCTCCCGCCCCCTCCCCTTCGACCACGGCCATAAGGAAGTGTGGCTGGACAGAGTCACCGGGAAGGTTTGCATGTCCATTTCGGCGAAGGCGATGGTGATTACCGGCATTGATGACCGGAGATACTGGAATTGGATTCCTACTGAAGAATCTAGGTTTCACACTGTGGCATATTTGCAGCAAATATGGTGGTTTGAAGTGGATGGGGAGGTTTCGTTTCCATTTCCTGCTGATATTTATACTCTCTCCTTTCGACTTCACCTTGGACGGTTTTCCAAAAGGCTAGGGCGGCGTGTTTGCAATTATGATCACACCCATGGTTGGGATATAAAACCTGTGAAATTTGAGTTTTCTACTTCAGATGGTCAGCAAGCATCATGTGAATGCTGTCTGGATGAAACTGAGATTGATGATACATATGGCAATCATAAGCGTGGATACTGGGTAGATTACAAGGTGGGCGAGTTTATTGTCAGTGGATCGGAGCCTACAACTCAAGTTAGATTTTCCATGAAACAGATCGATTGTACACATTCCAAAGGTGGGCTTTGTGTAGATGCTGTATTTATTGTACCTAGTGATTTGAGAGAGCGAAAGAGAAGAGGCATTTTGAAATAG

>Glyma10g07450.2   sequence type=CDS   gene model=Glyma10g07450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGCGTCGCTGTCGTCGAACGGTTCGAGCATCGGCCCGGGCCTCGGGGACATACCGGAGAGCTGCGTGGCGTGTGTGTTCCTCCACCTGACGCCGCCGGAGATCTGCAACCTCGCCCGCCTCAACCGCGCCTTTCGCGGCGCCGCCTCGTCGGACTCTGTCTGGGAGGCGAAGCTGCCGCGCAACTACCAGGATCTGCTAGATCTCGTGCCGCCGCCGGAGCGCCATCACCGCAGCCTCTCGAAAAAGGACATATTCGCGCTCCTCTCCCGCCCCCTCCCCTTCGACCACGGCCATAAGGTGGGTGTTGCACTTCAGGAAGTGTGGCTGGACAGAGTCACCGGGAAGGTTTGCATGTCCATTTCGGCGAAGGCGATGGTGATTACCGGCATTGATGACCGGAGATACTGGAATTGGATTCCTACTGAAGAATCTAGGTTTCACACTGTGGCATATTTGCAGCAAATATGGTGGTTTGAAGTGGATGGGGAGGTTTCGTTTCCATTTCCTGCTGATATTTATACTCTCTCCTTTCGACTTCACCTTGGACGGTTTTCCAAAAGGCTAGGGCGGCGTGTTTGCAATTATGATCACACCCATGGTTGGGATATAAAACCTGTGAAATTTGAGTTTTCTACTTCAGATGGTCAGCAAGCATCATGTGAATGCTGTCTGGATGAAACTGAGATTGATGATACATATGGCAATCATAAGCGTGGATACTGGGTAGATTACAAGGTGGGCGAGTTTATTGTCAGTGGATCGGAGCCTACAACTCAAGTTAGATTTTCCATGAAACAGATCGATTGTACACATTCCAAAGGTGGGCTTTGTGTAGATGCTGTATTTATTGTACCTAGTGATTTGAGAGAGCGAAAGAGAAGAGGCATTTTGAAATAG

Predicted protein sequences of Glyma10g07450

Limit To All Plant Sequences

>Glyma10g07450.1   sequence type=predicted peptide   gene model=Glyma10g07450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASLSSNGSSIGPGLGDIPESCVACVFLHLTPPEICNLARLNRAFRGAASSDSVWEAKLPRNYQDLLDLVPPPERHHRSLSKKDIFALLSRPLPFDHGHKEVWLDRVTGKVCMSISAKAMVITGIDDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVSFPFPADIYTLSFRLHLGRFSKRLGRRVCNYDHTHGWDIKPVKFEFSTSDGQQASCECCLDETEIDDTYGNHKRGYWVDYKVGEFIVSGSEPTTQVRFSMKQIDCTHSKGGLCVDAVFIVPSDLRERKRRGILK*

>Glyma10g07450.2   sequence type=predicted peptide   gene model=Glyma10g07450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASLSSNGSSIGPGLGDIPESCVACVFLHLTPPEICNLARLNRAFRGAASSDSVWEAKLPRNYQDLLDLVPPPERHHRSLSKKDIFALLSRPLPFDHGHKVGVALQEVWLDRVTGKVCMSISAKAMVITGIDDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVSFPFPADIYTLSFRLHLGRFSKRLGRRVCNYDHTHGWDIKPVKFEFSTSDGQQASCECCLDETEIDDTYGNHKRGYWVDYKVGEFIVSGSEPTTQVRFSMKQIDCTHSKGGLCVDAVFIVPSDLRERKRRGILK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain