Glyma10g07420 - SoyBase

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Report for Sequence Feature Glyma10g07420

Feature Type:	gene_model
Chromosome:	Gm10
Start:	6115757
stop:	6119645
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36630	AT	Annotation by Michelle Graham. TAIR10: Sulfite exporter TauE/SafE family protein \| chr2:15352767-15355050 REVERSE LENGTH=459	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
PTHR14255	Panther	ATP-DEPENDENT PROTEASE (CEREBLON)	JGI		ISS
PF01925	PFAM	Sulfite exporter TauE/SafE	JGI		ISS
UniRef100_Q75GI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q75GI8_ORYSJ	SoyBase	E_val: 1.00E-172	ISS
UniRef100_UPI000233CA94	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CA94 related cluster n=1 Tax=unknown RepID=UPI000233CA94	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07420

Paralog	Evidence	Comments
Glyma13g21310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g064500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g07420

Limit To All Plant Sequences

>Glyma10g07420.1   sequence type=CDS   gene model=Glyma10g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATGTTGTCTTCGAGAGGCTTCATCGCTTATCTCGTATCTGCTTTCTCTTGTGCTGTTCTGTCTGCGCTTTTTCTCACCAACCACATCCATCATGATGATAACAAGCCAATTACTTTGTTAGCCTCTCGTGTGTCTGAAACTCTTAAAGTTTGGCCAGACTTGGAGCCAAGTTGGAGACTTGTGTTGGCAACGGTTATTGGGTTTCTTGGATCAGCATGTGGAACCGTTGGTGGGGTTGGAGGTGGAGGCATTTTCGTTCCCATGCTCAATCTGCTTCTTGGCTTTGATACTAAGTCTGCTGCTGCTCTTTCTAAATGTATGATAATGGGGGCATCAGCATCATCGGTTTGGTATAATGTGAGAGTGCCGCATCCAACGAAAGAGGTGCCCATATTAGACTATGATCTGGCTCTTCTGTTCCAGCCTATGCTCATGCTTGGAATCACTGTTGGTGTTGCTCTCAGTGTTGTCTTCCCTTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGGGACTTCTTCAAGGTCATTCTTTAAAGGAATTGAGATGTGGAGGGAAGAGACTATTTTCAAGAGAGAAAAGACCAAGCAACGGGCGACGTTGGTTGATTCTCATGGTGAAGATAAGACAGTTAGAATCGACACAAAATATGAACCGCTGATTCCTAAAGAAGAGAAGTCAACTATACAAATTTTATGTCTCAACCTTAGGTGGAAGAGGATTCTGGTACTGATTGTGGTGTGGGTTGCTTTCCTTCTAGTTCAAGTCATCAAGAATGATGTAGAGGCATGCAGTCCATGGTATTGGGTGCTTTTTGGCTTGCAGTTTCCAATTGCACTTTTGGTGTTTGGGTATGAAGCAGTGAAGTTGTACAAGGAGCACAAAAGGAGAATGAGCACAAGGAACCTAGAATGCATCTGTGAGGCTTCTATAGAATGGACTGCTATGAACCTTGCATTTTGTTCATTGTGTGGCATTGTAGGGGGAATTGTTGGAGGCCTACTTGGTTCTGGAGGTGGATTTGTTTTGGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTCTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATGCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCTTTGTAAGAAGATTGATTGCATGCCTTGGGAGGGCATCAATCATTGTATTCATCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGGGTGTGGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCATGGGATTCTTAGGCTTCTGTTCCAGTCAGTGA

Predicted protein sequences of Glyma10g07420

Limit To All Plant Sequences

>Glyma10g07420.1   sequence type=predicted peptide   gene model=Glyma10g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPMLSSRGFIAYLVSAFSCAVLSALFLTNHIHHDDNKPITLLASRVSETLKVWPDLEPSWRLVLATVIGFLGSACGTVGGVGGGGIFVPMLNLLLGFDTKSAAALSKCMIMGASASSVWYNVRVPHPTKEVPILDYDLALLFQPMLMLGITVGVALSVVFPYWLITVLIIILFIGTSSRSFFKGIEMWREETIFKREKTKQRATLVDSHGEDKTVRIDTKYEPLIPKEEKSTIQILCLNLRWKRILVLIVVWVAFLLVQVIKNDVEACSPWYWVLFGLQFPIALLVFGYEAVKLYKEHKRRMSTRNLECICEASIEWTAMNLAFCSLCGIVGGIVGGLLGSGGGFVLGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLTSVSVLAGFWGQFFVRRLIACLGRASIIVFILSGVIFASALTMGVVGIENSIQMINNHEFMGFLGFCSSQ*

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