Report for Sequence Feature Glyma10g07400
Feature Type: gene_model
Chromosome: Gm10
Start: 6085673
stop: 6090720
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g07400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G03795 AT
Annotation by Michelle Graham. TAIR10: Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518
SoyBase E_val: 0 ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
KOG1021
KOG
Acetylglucosaminyltransferase EXT1/exostosin 1
JGI ISS
PTHR11062 Panther
EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED
JGI ISS
PTHR11062:SF1 Panther
EXOSTOSIN RELATED
JGI ISS
PF03016 PFAM
Exostosin family
JGI ISS
UniRef100_B9SRL1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SRL1_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233D05E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233D05E related cluster n=1 Tax=unknown RepID=UPI000233D05E
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g07400
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g07400
Paralog Evidence Comments
Glyma13g21270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g07400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g064300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g07400
Coding sequences of Glyma10g07400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g07400.2 sequence type=CDS gene model=Glyma10g07400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTAGTAGCAGATGGAATTGGTGGGCTTGTTGGGGTTCAGAAGTATTTTCAAAAATGAAGCTCTTGTTGTTCTTGGTGCCTCTCGTACTAGTTGCTGGCTTTGCTTCTGTAAAGGGTCCAAGCCTTTGCAGATGGGGTTTCATTGCGGACTGTTCTATCTCATTTACTCCTCTTCCTGCTTCTTCAAATTCCTCCTCACAAACACTTCATCAATCTAATGAAACTAAAGTTTTCAATGTCTCCAAGCCCGGGTTCAATTTAGCTGCTGCAAATGAATCGGATGAATCTCACCCACGACAGAAGCAGAAAAGAAAACTCAGTTTCATAGATAGAAATGAAGTTGTTCTAGCACAAGCTCGAGCTGCAATCAGAGAAGCCAAAAATGAGAATCAAACACAAGATTCAGATTATGTTCCAATAGGTCCGATGTATTGGAATGCTAAGACATTTCACAGGAGCTACTTAGAAATGGAGAAGCAATTCAAAGTATTTGTGTACGAAGAAGGAGAGACTCCAGTTTTCCACAATGGACCATGCAAAAGCATATACTCCATGGAGGGTAACTTTATACATGCTATTGAAATGAATGACCATTTTCGAACTAAAGATCCCAAGAAAGCACATGTGTTTTTCCTTCCTTTTAGTGTAGTAATGATGGTTCGATTTGTGTATCAAAGAGACTCACGTGACTTTGGCCCCATTAGAAAAACAGTCATAGACTATATCAATCTCATTGCTGCAAGATACTCTTATTGGAATCGAAGCCTTGGAGCTGATCACTTCATGCTTGCTTGCCATGACTGGGGGCCAGAAGCATCATTGTCCTTACCTTACCTGCACAAGAACTCTATTCGTGTACTTTGCAATGCCAATACCTCCGAAGGTTTCAAGCCTGCAAAGGATGTTTCATTTCCTGAAATTAATCTCCAAACCGGTTCAATAAACGGTTTCATTGGTGGGCCATCTGCATCTAAACGTTCAATTTTGGCTTTCTTTGCTGGAGGAGTTCATGGGCCTATTAGGCCAATTCTCCTTGAGCATTGGGAAAACAAGGATGAAGATATTCAAGTTCACAAGTACCTCCCAAAGGGTGTTTCTTACTATGACAAGTTGAGGAATAGCAAGTTTTGCCTTTGTCCTAGTGGGTATGAGGTGGCTAGCCCTAGAGTGGTGGAGGCAATTTACACAGGTTGTGTTCCTGTGCTCATTTCGGAGCACTATGTTCCTCCTTTTAGTGACGTTTTGAATTGGAAGTCGTTCTCAGTTGAGCTTTCAGTGAAGGACATTCCCAACTTGAAGGACATTTTGATGAGTATATCTCCAAGGCAGTATATAAGAATGCAAAGAAGAGTAATACAAATTCAAAGACACTTTGAGGTTCACTCTCCACCCAAGCGATTCGATGTGTTTCACATGATCCTTCATTCTGTGTGGCTTAGGAGACTCAACTTTAGAATGACTCTTAACTTGTAA
Predicted protein sequences of Glyma10g07400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g07400.2 sequence type=predicted peptide gene model=Glyma10g07400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSSRWNWWACWGSEVFSKMKLLLFLVPLVLVAGFASVKGPSLCRWGFIADCSISFTPLPASSNSSSQTLHQSNETKVFNVSKPGFNLAAANESDESHPRQKQKRKLSFIDRNEVVLAQARAAIREAKNENQTQDSDYVPIGPMYWNAKTFHRSYLEMEKQFKVFVYEEGETPVFHNGPCKSIYSMEGNFIHAIEMNDHFRTKDPKKAHVFFLPFSVVMMVRFVYQRDSRDFGPIRKTVIDYINLIAARYSYWNRSLGADHFMLACHDWGPEASLSLPYLHKNSIRVLCNANTSEGFKPAKDVSFPEINLQTGSINGFIGGPSASKRSILAFFAGGVHGPIRPILLEHWENKDEDIQVHKYLPKGVSYYDKLRNSKFCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVELSVKDIPNLKDILMSISPRQYIRMQRRVIQIQRHFEVHSPPKRFDVFHMILHSVWLRRLNFRMTLNL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
