Glyma10g07280 - SoyBase

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Report for Sequence Feature Glyma10g07280

Feature Type:	gene_model
Chromosome:	Gm10
Start:	5994322
stop:	5999021
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36660	AT	Annotation by Michelle Graham. TAIR10: poly(A) binding protein 7 \| chr2:15361476-15364398 REVERSE LENGTH=609	SoyBase	E_val: 4.00E-174	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG0123	KOG	Polyadenylate-binding protein (RRM superfamily)	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF159	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7L4Y5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyadenylate binding protein n=1 Tax=Medicago truncatula RepID=G7L4Y5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CE02	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CE02 related cluster n=1 Tax=unknown RepID=UPI000233CE02	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07280

Paralog	Evidence	Comments
Glyma13g21190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g063700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g07280

Limit To All Plant Sequences

>Glyma10g07280.1   sequence type=CDS   gene model=Glyma10g07280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTCCCGCGACGGTCGCCGCCGTTCCGGCATCGCTTTACGTCGGAGACCTCCACTCTGAAGTCGTAGACCACCACCTCTTCGAGGCTTTCGCGGAGTTCAAGACCATGGATTCCGTTCGCGTCTGCAGAGACCGCGTCACAATGAAATCGCTCTGTTACGGTTACGTCAACTTCAAGTCTCAGCAAGATGCAATTCGTGCAATGAAGTTGAAAAACAATTCTTATCTGAATGGAAAAGTGATAAGGGTCATGTGGTCACATCCTGATCCTAGTGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGGATCCATAGATAATGCGGGGTTGCATGATTTATTTCAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGGGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATAATGCCATTGAGAAGCTGAATGGCTCTACTGTGGGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCTGGCTATGATGCCAAATATACAAATTTGTACATTAAAAACTTGGACTCAGATATTACAGAAGCACTTCTTCAGGAAAAGTTCTCCTCTTTTGGAAAAATTATTAGCTTGGTTATATCAAAGGATGACAATGGGCTATCAAAGGGTTTTGCATTTGTGAACTATGAGAATCCAGATGATGCTAGAAAGGCGATGGAAGCAATGAATGGATTAAAATTTGGTTCAAAGAATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATCTTGCATCGTCAATTTGAGGAGAAACGTAAGGAACAAATATTGAAATATCAGGCATCTAACTTGTATGTGAAGAACATTGATGACGATGTTACCGATAAAGAACTGCGAGATCTGTTTAGTTCATGTGGCACTATAACTTCTGTAAAAGTTATGCGAGATGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCAGAGGAAGCTAATAAAGCTGTGAGGTCTTTTAATGGATGCATGTTCCACCGTAAACCATTGTATATTGCTATTGCTCAGAGGAAAATGGACAGGAAAACACAGTTGAATCTCCATTATGCACCGCAACAAACAGGATTGGATGGATCTTCAACTCCAGTTATCCCTGGTGGATTTCCACCTTACTTCTATCATAGTGTTGCTTCACAGATGTTTCAATCTGGGCTGTTGTATCAACCTCTGGGATTGAGGTCAGGATGGAGGGCTAATGACTCTGTGCCTCCCACTAGATCATTTCAACAATCACAGGTTCCTAACTTTACTAGGCATCATAGGCAAAACAGGAGCAGGATGAATGGGAATGTGAATTCACTGGGAAAAGCTCACTCTGGTGTATATATCCCGCAATACTATCAGGCAGTCGAGTACTTGGCAGTCTAG

Predicted protein sequences of Glyma10g07280

Limit To All Plant Sequences

>Glyma10g07280.1   sequence type=predicted peptide   gene model=Glyma10g07280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVPATVAAVPASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMKLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRKMDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPPYFYHSVASQMFQSGLLYQPLGLRSGWRANDSVPPTRSFQQSQVPNFTRHHRQNRSRMNGNVNSLGKAHSGVYIPQYYQAVEYLAV*

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