Glyma10g07270 - SoyBase

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Report for Sequence Feature Glyma10g07270

Feature Type:	gene_model
Chromosome:	Gm10
Start:	5976630
stop:	5983527
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36670	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr2:15364949-15368016 REVERSE LENGTH=507	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_G7IA56	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase-like protein n=1 Tax=Medicago truncatula RepID=G7IA56_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CE01	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CE01 related cluster n=1 Tax=unknown RepID=UPI000233CE01	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07270

Paralog	Evidence	Comments
Glyma13g21180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g063600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g07270

Limit To All Plant Sequences

>Glyma10g07270.3   sequence type=transcript   gene model=Glyma10g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAACACTAGTATCTGACATGAATCCTGGTCATTAAACATTTCCATAATCAGTAACCATCGTGTCCTAAAGAAACTGTCACAGTCTCTTCTCTCTCTCTCTCTCTCTCTTCTATGTTTCAACTTTCAATGCTCCGAGTCACTCGCTATTCCCACTAGTAGCACCCAAACAAAACCCAATACCACACGCAATAACAGAAAAACATGCGGTGTTGCATTCCGACGTTGTTGGCCGTAATCACCGTACTGTTGTCGGCGGTGCACGGCGTTTTCCTTCCTCTGGAGCGGAGCATTCCTCCGACGAGCCACCGCGTGGAGGTGGCGGCGCTGAGGGCCCGCGATAGAGCCCGCCATGCCCGCATGTTGCGCGGCGTCGTCGACTTCTCCGTCCAAGGCACCTCCGATCCAAACTCCTTTAACGTTCAGATTGATACGGGGAGTGATATATTGTGGGTGAATTGCAATACTTGCAGTAATTGTCCTCAGTCTAGTCAACTAGGGATTGAGCTTAATTTCTTTGACACGGTTGGCTCATCCACGGCAGCGTTGATTCCCTGCTCGGACCTGATATGCACTTCTGGAGTCCAGGGTGCTGCTGCTGAGTGCTCCCCGAGGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGTTATTATGTTTCGGATGCAATGTATTTTAACTTGATCATGGGACAGCCTCCGGCAGTTAACTCTACGGCTACCATTGTTTTTGGGTGTAGCATTAGTCAGTCTGGAGATTTGACTAAGACAGATAAGGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGACCTCTATCTGTTGTATCACAATTGTCATCTCAAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAGGGAGACGGCAATGGAGGAGGCATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGCAACCTCTCCCAATTAATCCAGCTGTATTTTCAATATCTAACAACCGAGGAGGGACTATAGTTGACTGTGGTACAACATTGGCATATCTTATTCAAGAAGCTTATGATCCTCTTGTCACTGCTATAAATACTGCCGTGTCACAATCTGCTAGGCAAACAAATTCCAAAGGAAACCAGTGTTATCTGGTCTCAACCAGTATAGGTGACATTTTTCCTTTGGTAAGTTTAAACTTTGAGGGTGGAGCATCAATGGTTTTAAAACCAGAGCAGTACCTTATGCATAATGGTTACCTTGATGGTGCAGAAATGTGGTGCGTTGGTTTCCAGAAATTGCAGGAGGGAGCCTCAATTTTAGGAGATCTTGTCCTAAAGGATAAGATAGTTGTGTATGACATAGCTCAACAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCTGTAAATGTTTCGGTGACTATGAGCAAGGACGAGTACATCAATGCAGGGCAGCTTCATGTTAGCAGCTCCAAAATACACATTCTTTCTAAGTTACTACCTGTAAGCTTTGTGGCTCTCTCTATGTACATAATGTTGGTATGAAAATTTTTATGTGAAGTGTTGGGAATCAAAATCATCACTCAAGATAATGTAAAAATAAGCTTTCAACATTAACCATGGGAAGAAAGATCAAGTGAGAAGACAAAGATTTATGATTCAAGTAGCTTGGAAGAAATGCAGATTTGGATAGAAGCTAGACAATTGGAGATTTCGATGAAAGGTTGAGAAGGGAAAATTTTGACAAAAGTTTGATAAGTGGAGATTTCCATGGAAGTTCAAAGAATGATTGGTTGAAATATCATGATTGAAAGTACCCAATTTTGACCGGGTAAAAGGGGTGGGGTGTGGTAAACAAAAGTTGATTAAAAAAAAACTAATTATTATTAAAATTTCTGAAGTTTGAATAATTTGTTTATAACCTTTATTCTTGTTTGATAACTTAAATTGAAATTGAACCTGA

Coding sequences of Glyma10g07270

Limit To All Plant Sequences

>Glyma10g07270.2   sequence type=CDS   gene model=Glyma10g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGTGTTGCATTCCGACGTTGTTGGCCGTAATCACCGTACTGTTGTCGGCGGTGCACGGCGTTTTCCTTCCTCTGGAGCGGAGCATTCCTCCGACGAGCCACCGCGTGGAGGTGGCGGCGCTGAGGGCCCGCGATAGAGCCCGCCATGCCCGCATGTTGCGCGGCGTCGTCGACTTCTCCGTCCAAGGCACCTCCGATCCAAACTCCTTTAACGTTCAGATTGATACGGGGAGTGATATATTGTGGGTGAATTGCAATACTTGCAGTAATTGTCCTCAGTCTAGTCAACTAGGGATTGAGCTTAATTTCTTTGACACGGTTGGCTCATCCACGGCAGCGTTGATTCCCTGCTCGGACCTGATATGCACTTCTGGAGTCCAGGGTGCTGCTGCTGAGTGCTCCCCGAGGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGTTATTATGTTTCGGATGCAATGTATTTTAACTTGATCATGGGACAGCCTCCGGCAGTTAACTCTACGGCTACCATTGTTTTTGGGTGTAGCATTAGTCAGTCTGGAGATTTGACTAAGACAGATAAGGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGACCTCTATCTGTTGTATCACAATTGTCATCTCAAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAGGGAGACGGCAATGGAGGAGGCATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGCAACCTCTCCCAATTAATCCAGCTGTATTTTCAATATCTAACAACCGAGGAGGGACTATAGTTGACTGTGGTACAACATTGGCATATCTTATTCAAGAAGCTTATGATCCTCTTGTCACTGCTATAAATACTGCCGTGTCACAATCTGCTAGGCAAACAAATTCCAAAGGAAACCAGTGTTATCTGGTCTCAACCAGTATAGGTGACATTTTTCCTTTGGTAAGTTTAAACTTTGAGGGTGGAGCATCAATGGTTTTAAAACCAGAGCAGTACCTTATGCATAATGGTTACCTTGATGGTGCAGAAATGTGGTGCGTTGGTTTCCAGAAATTGCAGGAGGGAGCCTCAATTTTAGGAGATCTTGTCCTAAAGGATAAGATAGTTGTGTATGACATAGCTCAACAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCTGTAAATGTTTCGGTGACTATGAGCAAGGACGAGTACATCAATGCAGGGCAGCTTCATGTTAGCAGCTCCAAAATACACATTCTTTCTAAGTTACTACCTGAGGATGATATGCAGTTCAGGATCAAATTAACAACGTCAAAAGGCATGGATAGCTCTTAG

>Glyma10g07270.3   sequence type=CDS   gene model=Glyma10g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGTGTTGCATTCCGACGTTGTTGGCCGTAATCACCGTACTGTTGTCGGCGGTGCACGGCGTTTTCCTTCCTCTGGAGCGGAGCATTCCTCCGACGAGCCACCGCGTGGAGGTGGCGGCGCTGAGGGCCCGCGATAGAGCCCGCCATGCCCGCATGTTGCGCGGCGTCGTCGACTTCTCCGTCCAAGGCACCTCCGATCCAAACTCCTTTAACGTTCAGATTGATACGGGGAGTGATATATTGTGGGTGAATTGCAATACTTGCAGTAATTGTCCTCAGTCTAGTCAACTAGGGATTGAGCTTAATTTCTTTGACACGGTTGGCTCATCCACGGCAGCGTTGATTCCCTGCTCGGACCTGATATGCACTTCTGGAGTCCAGGGTGCTGCTGCTGAGTGCTCCCCGAGGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGTTATTATGTTTCGGATGCAATGTATTTTAACTTGATCATGGGACAGCCTCCGGCAGTTAACTCTACGGCTACCATTGTTTTTGGGTGTAGCATTAGTCAGTCTGGAGATTTGACTAAGACAGATAAGGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGACCTCTATCTGTTGTATCACAATTGTCATCTCAAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAGGGAGACGGCAATGGAGGAGGCATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGCAACCTCTCCCAATTAATCCAGCTGTATTTTCAATATCTAACAACCGAGGAGGGACTATAGTTGACTGTGGTACAACATTGGCATATCTTATTCAAGAAGCTTATGATCCTCTTGTCACTGCTATAAATACTGCCGTGTCACAATCTGCTAGGCAAACAAATTCCAAAGGAAACCAGTGTTATCTGGTCTCAACCAGTATAGGTGACATTTTTCCTTTGGTAAGTTTAAACTTTGAGGGTGGAGCATCAATGGTTTTAAAACCAGAGCAGTACCTTATGCATAATGGTTACCTTGATGGTGCAGAAATGTGGTGCGTTGGTTTCCAGAAATTGCAGGAGGGAGCCTCAATTTTAGGAGATCTTGTCCTAAAGGATAAGATAGTTGTGTATGACATAGCTCAACAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCTGTAAATGTTTCGGTGACTATGAGCAAGGACGAGTACATCAATGCAGGGCAGCTTCATGTTAGCAGCTCCAAAATACACATTCTTTCTAAGTTACTACCTGTAAGCTTTGTGGCTCTCTCTATGTACATAATGTTGGTATGA

Predicted protein sequences of Glyma10g07270

Limit To All Plant Sequences

>Glyma10g07270.2   sequence type=predicted peptide   gene model=Glyma10g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRCCIPTLLAVITVLLSAVHGVFLPLERSIPPTSHRVEVAALRARDRARHARMLRGVVDFSVQGTSDPNSFNVQIDTGSDILWVNCNTCSNCPQSSQLGIELNFFDTVGSSTAALIPCSDLICTSGVQGAAAECSPRVNQCSYTFQYGDGSGTSGYYVSDAMYFNLIMGQPPAVNSTATIVFGCSISQSGDLTKTDKAVDGIFGFGPGPLSVVSQLSSQGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQPLPINPAVFSISNNRGGTIVDCGTTLAYLIQEAYDPLVTAINTAVSQSARQTNSKGNQCYLVSTSIGDIFPLVSLNFEGGASMVLKPEQYLMHNGYLDGAEMWCVGFQKLQEGASILGDLVLKDKIVVYDIAQQRIGWANYDCSLSVNVSVTMSKDEYINAGQLHVSSSKIHILSKLLPEDDMQFRIKLTTSKGMDSS*

>Glyma10g07270.3   sequence type=predicted peptide   gene model=Glyma10g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRCCIPTLLAVITVLLSAVHGVFLPLERSIPPTSHRVEVAALRARDRARHARMLRGVVDFSVQGTSDPNSFNVQIDTGSDILWVNCNTCSNCPQSSQLGIELNFFDTVGSSTAALIPCSDLICTSGVQGAAAECSPRVNQCSYTFQYGDGSGTSGYYVSDAMYFNLIMGQPPAVNSTATIVFGCSISQSGDLTKTDKAVDGIFGFGPGPLSVVSQLSSQGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQPLPINPAVFSISNNRGGTIVDCGTTLAYLIQEAYDPLVTAINTAVSQSARQTNSKGNQCYLVSTSIGDIFPLVSLNFEGGASMVLKPEQYLMHNGYLDGAEMWCVGFQKLQEGASILGDLVLKDKIVVYDIAQQRIGWANYDCSLSVNVSVTMSKDEYINAGQLHVSSSKIHILSKLLPVSFVALSMYIMLV*

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