Glyma10g07240 - SoyBase

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Report for Sequence Feature Glyma10g07240

Feature Type:	gene_model
Chromosome:	Gm10
Start:	5954561
stop:	5956712
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32700	AT	Annotation by Michelle Graham. TAIR10: PLATZ transcription factor family protein \| chr1:11827588-11829444 FORWARD LENGTH=213	SoyBase	E_val: 2.00E-70	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF04640	PFAM	PLATZ transcription factor	JGI		ISS
UniRef100_D6MKH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Lycoris longituba RepID=D6MKH3_9ASPA	SoyBase	E_val: 5.00E-71	ISS
UniRef100_I1L944	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L944_SOYBN	SoyBase	E_val: 1.00E-165	ISS

Expression Patterns of Glyma10g07240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07240

Paralog	Evidence	Comments
Glyma13g21140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g063200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g07240

Limit To All Plant Sequences

>Glyma10g07240.2   sequence type=transcript   gene model=Glyma10g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACTCCTCAGCCACCTCTTTCAATCTCCACCCTCTATTCCCACCCCTAGTTCTTTATTCACCCCCTTTGTCCCTATAGTCTTAGCTTCTTCTGTCTTGTTGAATTCTTAGTTCAACCCCGTTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCTCTCTATCTCTCTCTTATTCCACCATCCTCGTTTTCAGAAGTGAATCCCAATGCCTTCCTCACTCACCCATTGAGGCACATTCCATTAACTATCCATCAATTCAACCATGGGCACAATGTTGGTGCCACCATGGCTTGAGCCACTCCTAAACACATCCTTCTTCAATGTGTGTCGGATTCACGGAGATGCCGCGAGGAGCGAATGTAACATGTTTTGTCTCGACTGCAATGAGAATGCGTTTTGCTTCTATTGCCGTTCCTCAAAACACAAGGATCACCAAGTCATTCAGATACGGAGATCTTCGTATCACGATGTAGTGAGGGTGGCGGAAATTCAGAAAGTGTTGGACATTAGTGGAGTTCAAACATATGTGATCAACAGTGCCAGAGTTTTGTTTCTGAATGAGAGGCCTCAACCAAAGTCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGGTGTAAGCTTGTAGGAATAAAGAGAAATGGGGATGCAAGTTTTACTTTGGATGCTAAAAATGAGGCATCAACAATGGAGGGTATGTCAAGGAGATCGGTTTCTTCAAGACATCATCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGACATGTACCCGGCCACACCTTCTCCACCTGCTTCAAACGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCACCTTTTGGCTCCTAATCATTTTTTTTTTCTTTTTTACCCTAAAAAATTGGTGGTACATATACTCAATATTCAACCCCCGTTTACCATTTCTTCTTCTTCTTTTGAATCAATTAACCCCTCTTTGGGGGGGAATCTGGTCGGTTGTATAATCTATTTTTTTTTTCAGTAAAGAGAAAAAGAAAAATGGTAGGCTTTGGTGGAGGGTGTCATTTGTCCAATGTCCATGAAGTGGTAAAAGCAAAAAAGAGGAAAAGGGTATATAGGAAAGTTCCTTCTTTTGGGGTTTGGGTCCCAAAACAACAAATTATCCCTTGTGAAGAATCAATAATGCATGTTTGTTTAATATTTAATACTTTCGAGTGTACATGTCATTAAGAAATTAAAAAGCAAGACTTTGTGGAGTCCGTTTCAATGTTTCATAGTTTTCTATGCCCCACCATCCACATGGGCCGTT

Coding sequences of Glyma10g07240

Limit To All Plant Sequences

>Glyma10g07240.1   sequence type=CDS   gene model=Glyma10g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCATTTTGTTTGTTTATTATCAATTTTTTTGGTTTGAGCAGGGCACAATGTTGGTGCCACCATGGCTTGAGCCACTCCTAAACACATCCTTCTTCAATGTGTGTCGGATTCACGGAGATGCCGCGAGGAGCGAATGTAACATGTTTTGTCTCGACTGCAATGAGAATGCGTTTTGCTTCTATTGCCGTTCCTCAAAACACAAGGATCACCAAGTCATTCAGATACGGAGATCTTCGTATCACGATGTAGTGAGGGTGGCGGAAATTCAGAAAGTGTTGGACATTAGTGGAGTTCAAACATATGTGATCAACAGTGCCAGAGTTTTGTTTCTGAATGAGAGGCCTCAACCAAAGTCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGGTGTAAGCTTGTAGGAATAAAGAGAAATGGGGATGCAAGTTTTACTTTGGATGCTAAAAATGAGGCATCAACAATGGAGGGTATGTCAAGGAGATCGGTTTCTTCAAGACATCATCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGACATGTACCCGGCCACACCTTCTCCACCTGCTTCAAACGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCACCTTTTGGCTCCTAA

>Glyma10g07240.2   sequence type=CDS   gene model=Glyma10g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACAATGTTGGTGCCACCATGGCTTGAGCCACTCCTAAACACATCCTTCTTCAATGTGTGTCGGATTCACGGAGATGCCGCGAGGAGCGAATGTAACATGTTTTGTCTCGACTGCAATGAGAATGCGTTTTGCTTCTATTGCCGTTCCTCAAAACACAAGGATCACCAAGTCATTCAGATACGGAGATCTTCGTATCACGATGTAGTGAGGGTGGCGGAAATTCAGAAAGTGTTGGACATTAGTGGAGTTCAAACATATGTGATCAACAGTGCCAGAGTTTTGTTTCTGAATGAGAGGCCTCAACCAAAGTCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGGTGTAAGCTTGTAGGAATAAAGAGAAATGGGGATGCAAGTTTTACTTTGGATGCTAAAAATGAGGCATCAACAATGGAGGGTATGTCAAGGAGATCGGTTTCTTCAAGACATCATCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGACATGTACCCGGCCACACCTTCTCCACCTGCTTCAAACGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCACCTTTTGGCTCCTAA

Predicted protein sequences of Glyma10g07240

Limit To All Plant Sequences

>Glyma10g07240.1   sequence type=predicted peptide   gene model=Glyma10g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPILFVYYQFFWFEQGTMLVPPWLEPLLNTSFFNVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDASFTLDAKNEASTMEGMSRRSVSSRHHQEEELREGSQQDMYPATPSPPASNARRRKGIPHRAPFGS*

>Glyma10g07240.2   sequence type=predicted peptide   gene model=Glyma10g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTMLVPPWLEPLLNTSFFNVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDASFTLDAKNEASTMEGMSRRSVSSRHHQEEELREGSQQDMYPATPSPPASNARRRKGIPHRAPFGS*

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