Report for Sequence Feature Glyma10g07170
Feature Type: gene_model
Chromosome: Gm10
Start: 5870580
stop: 5882189
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g07170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G36720 AT
Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | chr2:15393447-15399189 FORWARD LENGTH=1007
SoyBase E_val: 0 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009630 GO-bp
Annotation by Michelle Graham. GO Biological Process: gravitropism
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PF00628 PFAM
PHD-finger
JGI ISS
UniRef100_G7L4X9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Chromodomain-helicase-DNA-binding protein n=1 Tax=Medicago truncatula RepID=G7L4X9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233C907 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C907 related cluster n=1 Tax=unknown RepID=UPI000233C907
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g07170
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g07170
Paralog Evidence Comments
Glyma13g21056 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g07170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g062700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g07170
Coding sequences of Glyma10g07170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g07170.3 sequence type=CDS gene model=Glyma10g07170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAATCCACCGCCACCACCGTTTCCCCCGATTCCGAAAACGACACCACCAACACGCGAGTGAACGGCTACGTCGTTTACACTCGCCGCAAGCGCACCCTCCTCACCCTCCATTCCGGTAATGACGCCGCCAAGAGGCTCAGAACAGCTGAAATCAAAGTCGAAGCTCGCAACGACGATGACGACGTCGTTTTCAAGCGCCCCAAGCTCGAGTCTGAATTAACGGAGGAGGAATTGAAAACGACGTCGTCGTCGAAGAAGATCATTGTCGTCCACAAGAAACCCGCCACCGTCAAGGAGCTCTTCCAAACCGGCTTGCTCGATGGGGTACCGGTCGTTTACGTCGGTTGCAAAAAGGATTCAACTACGGAATTGCGAGGTGAAATCAAAGATGGGGGGATCTTGTGCTCATGCAGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATTCATGCGTGCAACATATATAAGAGGGCAGCACAATATATTTGCCTTGAAAATGGGAAGAGCATGCTTGAACTAATGAGAGCATGCAGGGCAGCTCCACTGCATACATTGGAGGCGACCATTCAAAATTTCATTAATTCTCCACCTGAGGAGAAATATTTTACTTGCAAAAATTGCAGAGGGTGTTTCCCTTCTTCCAATGTGGAAAGAGTGGGGCTTTTATGTCTATCTTGCGTGGAATCAAGGAAATCTGAAAAAAGTTCTATTCATGCTGTTGGCAAAAGAATCAGGTCCCCTCGGCCAGTATTATTCTCCCGTTCATGTTCATGTTGTGCTTCTGAATCTGAACTATGTATCACTCCTCAAACTAAGAAACAGTGGAAGACAAGAACAAAGTCATCAAAACTGTCGGTAAAATTGAAGACTGCACCAATTACTTCAAAGTGTTTATCTCCACAAAATAAAAGTCAGTGGAGGATCTCTAAAAGGTATCAACGATTACATAAATTAATTTTTGAAGAGGATGGATTGCCTAATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAGGGTATCAAAACATGCTCTGGAATTGTCTGTCGATGCTGCAACACTGAGATCAGCCCCTCACAATTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATTCATCTACACGTCAAATGGGGTGTCACTCCATGAGTTAGCGATATTTCTCTCAAAAGATCACAAATGCACTACAAAGCAGAATGATTATGTATGTGTTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGTCCTAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTATTCCTCGGGGTGAGTGGTACTGTCAAATTTGTCAACACACATTCCTCAGAGAAAGGCCTGTGTTACACAATGCCGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCTATTGAGCAGATTGCCAAGAGATGCATTCGCATTGTAAAAGACATAGGAGCTGAGATGGGTGGATGTGTTTTGTGCAGGAGTTCTGACTTCAGCAGATCAGGATTTGGTCCTCGCACAATTATAATTTGTGATCAGTGTGAAAAGGAATATCATGTGGGCTGCTTGAGGGATCATAAGATGGCATATTTAAAGGAGTTGCCAGAAGGGGATTGGTTTTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGAGAATCTCCTGATTAGGGTGGCTGAGAGACTTCCTGAATCTCTTTTGGATGTTATAAAGAAGAAGCAAGTGGGAAGATGTTTAGAACCCCTTAATGAAATTGATGTACGATGGAAACTTCTTAATGGAAAAATTGCATCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGTCCATGTTTCATGAATGCTTTGATCCTATAGTTGATCCAGCTGCCGGACGTGACCTTATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTGATTGTCAATTCATCTGTGGTATCCGCGGGCATGGTTCGAATTTTCGGTAGAGATATTGCCGAACTTCCTTTAGTTGCAACAAGATATAAGAACCGTGGAAAGGGCTACTTCCAAACACTTTTCGCGTGCATTGAGAGGCTGCTGGCTTTTTTGAATGTGAAAAATCTTGTGCTACCAGCTGCTGAAGAAGCAGCATCTATATGGACAGAAAAATTCGGGTTTAGCAAGATGAAACCCAACCAGCTTACCAACTACAGAATGAACTGCCATCAAATCATGGCATTCAAAGGGACAAATATGCTTCATAAAACGGTGCCTCAATGTCGGGTCATCAATACTCAATTGTGA
Predicted protein sequences of Glyma10g07170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g07170.3 sequence type=predicted peptide gene model=Glyma10g07170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESTATTVSPDSENDTTNTRVNGYVVYTRRKRTLLTLHSGNDAAKRLRTAEIKVEARNDDDDVVFKRPKLESELTEEELKTTSSSKKIIVVHKKPATVKELFQTGLLDGVPVVYVGCKKDSTTELRGEIKDGGILCSCSLCNGRRVIPPSQFEIHACNIYKRAAQYICLENGKSMLELMRACRAAPLHTLEATIQNFINSPPEEKYFTCKNCRGCFPSSNVERVGLLCLSCVESRKSEKSSIHAVGKRIRSPRPVLFSRSCSCCASESELCITPQTKKQWKTRTKSSKLSVKLKTAPITSKCLSPQNKSQWRISKRYQRLHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTCSGIVCRCCNTEISPSQFEVHAGWASRRKPYAFIYTSNGVSLHELAIFLSKDHKCTTKQNDYVCVVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHTFLRERPVLHNADAVAAGRVEGVDPIEQIAKRCIRIVKDIGAEMGGCVLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWFCCNDCTRIHSTLENLLIRVAERLPESLLDVIKKKQVGRCLEPLNEIDVRWKLLNGKIASPETRPLLLEAVSMFHECFDPIVDPAAGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMVRIFGRDIAELPLVATRYKNRGKGYFQTLFACIERLLAFLNVKNLVLPAAEEAASIWTEKFGFSKMKPNQLTNYRMNCHQIMAFKGTNMLHKTVPQCRVINTQL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
