SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38660 | AT | Annotation by Michelle Graham. TAIR10: Pathogenesis-related thaumatin superfamily protein | chr4:18066448-18067984 REVERSE LENGTH=345 | SoyBase | E_val: 1.00E-37 | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0048653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther development | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF00314 | PFAM | Thaumatin family | JGI | ISS | |
| UniRef100_B9S0C6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein P21, putative n=1 Tax=Ricinus communis RepID=B9S0C6_RICCO | SoyBase | E_val: 2.00E-78 | ISS |
| UniRef100_UPI000233CDFA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CDFA related cluster n=1 Tax=unknown RepID=UPI000233CDFA | SoyBase | E_val: 5.00E-175 | ISS |
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Glyma10g07075 not represented in the dataset |
Glyma10g07075 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g062100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g07075.1 sequence type=CDS gene model=Glyma10g07075 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGAACGTCTCTCTGAATCTTTTTCTTCCCATGCTGCTGCTATGTGCAGGAGTGCAATCTGACGTGACTTTCACTTTCGAGAACTTATGCTCGGACACCCTGTGGCGCGCCTCAAACCCTAGCATCGGAGACTTGGAGCCAGACCTTCCCCGCGACACCTACGAGATATTCAACATGGACGACCACTACAGCGGCTCCATCTGGGTTCGAACCGGTTGCTCCACCAACGCATCGAACTACTTCTCGTGCGAAACCGGCGACTGTGGCAACGGGATCATGGAGTGTGCAGGCCTCAACCCCTCATTCCCAATAACCCAATTAAACTTCGTTGTGAACAACCCTATTGTGTCCTACGAAGTGAGCTTGAAGCATGGCCAAAACATGTTGGTTCGAATCAAACCAAATGGTGGAACCCTCGTGGACGGTTCAGGGCCATGCCCTATGGTGGATTGCAACAAAGAGCTTTCTAGTGTGTGCCCTTTGGATTTGATTGCTGGGAACAAGAATGACCAATATGTGGGATGTAATAGTCCTTGTGATGGGTATAAGGACCCTAAATATTGTTGCAATGGCAATGGTTGCCAACCGGATGAGATTTCCGTGAAGTACAAAGGGCTTTGTCCGTTTGCTCATACTTACCCTGGGGACAATCAACCTCCGATTTATCAGTGTAAAGGGGCTGATAGTTATGATATAACCTTTTGTCCTGCCCTTTAG
>Glyma10g07075.1 sequence type=predicted peptide gene model=Glyma10g07075 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKNVSLNLFLPMLLLCAGVQSDVTFTFENLCSDTLWRASNPSIGDLEPDLPRDTYEIFNMDDHYSGSIWVRTGCSTNASNYFSCETGDCGNGIMECAGLNPSFPITQLNFVVNNPIVSYEVSLKHGQNMLVRIKPNGGTLVDGSGPCPMVDCNKELSSVCPLDLIAGNKNDQYVGCNSPCDGYKDPKYCCNGNGCQPDEISVKYKGLCPFAHTYPGDNQPPIYQCKGADSYDITFCPAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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