Glyma10g07060 - SoyBase

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Report for Sequence Feature Glyma10g07060

Feature Type:	gene_model
Chromosome:	Gm10
Start:	5777886
stop:	5779414
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26040	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr3:9519741-9521069 FORWARD LENGTH=442	SoyBase	E_val: 1.00E-85	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_B9T433	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative n=1 Tax=Ricinus communis RepID=B9T433_RICCO	SoyBase	E_val: 3.00E-117	ISS
UniRef100_UPI000233CDF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CDF8 related cluster n=1 Tax=unknown RepID=UPI000233CDF8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g07060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g061900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g07060

Limit To All Plant Sequences

>Glyma10g07060.2   sequence type=CDS   gene model=Glyma10g07060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTTGAAATAATCTCCACTCAGTGCATCAAACCCTCTTGCACAACACCAAATCACCCAAATACATATAATCTCTCAATCTTAGACCAGTTCATGCCTTCTATATACATACCAATGGTTCTTTTCTACTCTTTTGCTCAGAGTTCTCAAGCCAATATTGACAGTACTATAACTCAACAAAGATTGAAACAATTAAAGGAATCATTATCACAAGTCTTGACTCATTTTTACCCATTCGCTGGAAGGGTTAAGGACAAGTTTACCATCGATTGCAATGATGAAGGGGTTCACTACACCGAGGCCAAAGTAAGTTGCACTCTAGCTGAATTTTTCAACCAACCTAATTTCTCGTCGCTTATCCATAAACTTGTTCCAAATCAACCAATTATGGAATTAGCGACCGAAGGGTACACAGCCATGGTACAAGTGAATTGTTTTGCATGTGGTGGCATGGTGATAGGTACCTTGATATCTCACATGATAGCGGATGGAGCAGGTGCAAGTTTCTTTTTAAATAGTTGGGGTTCTAATTCTAACTTTTCTCATCAAGATGCATTTGATCAATTTCCAAACTTTGATACCCCTTTCCCTCAGAATAATAATAATTATGCATGCCCACATGACACAAATGTGATGAATTTGTGTGGCCAATTTTTGAACGAGGGTAGGGTTGCTATGAGGAGGTTTTTATTTGATGCTGAAGCTATTTCGAGGTTAAGGGCTCAAGGGTCTAGTTTAACCGTGCAAAACCCTACTCGAGTGGAGGTAGTAACATCCCTTCTATGCAAATGTACTGCAAAAGTTTTCAATGCAAACTTTGGTTTAGAGAGGCCTACTTTGATAACTCATGCGGTAAATATGCGTAGAAGGGCATCTCCTATGTTTCCAAAATCGTGTATGGGTAATTTTGCATGGTTGGCTTTGGCTTTAATAATGAGTTCAAAGGACAACAAGGTAATAATGGAGTTATTACCTGACTTGGTTGTTAAATTGAGGGAAGCAGTGTCAAGTATCAACTCAGATTTTGTGAAAGGCTTCGAAGGTGATGAAGGGTATGCTAAATATTGTGAAGTTTCAAAAGAGTTAATTGAGAAAGCATCGAGTTTTGCTGCAACGACCACAAGTGGGGTTAATTACGTTCATTTTACGAGTTGGTGCAACTTTGGACTTTATGACGTTGATTATGGATGGGGAAAACCAATTTGGGTGTCTTGTGTGGCTGATTCAGTTGACGATTCTATGTTTTTTAACGCGGTCATACTAATGGATACACCTTCAGGAAATGGAATTGAATGTTGGGTTTACTTGAATGAAGATGAAATGGCCATATTGCAACAAGACAAGGAGCTCCTTGCTTTTTCAACCTTAGATCCAAATCCTCAGCAACTAAAGGATTAA

Predicted protein sequences of Glyma10g07060

Limit To All Plant Sequences

>Glyma10g07060.2   sequence type=predicted peptide   gene model=Glyma10g07060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVEIISTQCIKPSCTTPNHPNTYNLSILDQFMPSIYIPMVLFYSFAQSSQANIDSTITQQRLKQLKESLSQVLTHFYPFAGRVKDKFTIDCNDEGVHYTEAKVSCTLAEFFNQPNFSSLIHKLVPNQPIMELATEGYTAMVQVNCFACGGMVIGTLISHMIADGAGASFFLNSWGSNSNFSHQDAFDQFPNFDTPFPQNNNNYACPHDTNVMNLCGQFLNEGRVAMRRFLFDAEAISRLRAQGSSLTVQNPTRVEVVTSLLCKCTAKVFNANFGLERPTLITHAVNMRRRASPMFPKSCMGNFAWLALALIMSSKDNKVIMELLPDLVVKLREAVSSINSDFVKGFEGDEGYAKYCEVSKELIEKASSFAATTTSGVNYVHFTSWCNFGLYDVDYGWGKPIWVSCVADSVDDSMFFNAVILMDTPSGNGIECWVYLNEDEMAILQQDKELLAFSTLDPNPQQLKD*

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