SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G53180 | AT | Annotation by Michelle Graham. TAIR10: glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852 | SoyBase | E_val: 0 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamine biosynthetic process | SoyBase | N/A | ISS |
| GO:0006569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process | SoyBase | N/A | ISS |
| GO:0006807 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrogen fixation | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root formation | SoyBase | N/A | ISS |
| GO:0048829 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root cap development | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004356 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate-ammonia ligase activity | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| GO:0043015 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: gamma-tubulin binding | SoyBase | N/A | ISS |
| GO:0043621 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein self-association | SoyBase | N/A | ISS |
| KOG0683 | KOG | Glutamine synthetase | JGI | ISS | |
| PTHR20852 | Panther | GLUTAMINE SYNTHETASE | JGI | ISS | |
| PTHR20852:SF8 | Panther | NODULIN / GLUTAMATE-AMMONIA LIGASE-LIKE PROTEIN | JGI | ISS | |
| PF00120 | PFAM | Glutamine synthetase, catalytic domain | JGI | ISS | |
| PF04909 | PFAM | Amidohydrolase | JGI | ISS | |
| UniRef100_I1L922 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L922_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I6WUR4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamine synthetase n=1 Tax=Camellia sinensis RepID=I6WUR4_CAMSI | SoyBase | E_val: 0 | ISS |
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Glyma10g06820 not represented in the dataset |
Glyma10g06820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g060200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g06820.1 sequence type=CDS gene model=Glyma10g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATTGAGTGAGTTGAGAAAAGCGGTGGAAGAGGTGGAGCTGGTGGACGCTCATGCTCACAACATAGTTTCTCTCGATTCCAACTTTGCTTTTATCCATGCCTTCTCTGAAGCCTATGGTGATGCTGTTACTTTCTCACCACACACTCTATCTTTCAAGAGAAATTTAAGAGAAATTGCTGAGCTGTATGGATCCGAGCTATCTTTGCAAGGTGTTGAAGAACACCGTAGAGTATCTGGAATGCAATCCATCTGCTCAACATGCTTCAAAGCTGCAAGAATCTCTGCCATACTTATTGATGATGGCTTACAATTGGACAAAAAGCATGATATAGAATGGCATAGGAGTTTTACACCTCTTGTTGGTAGAATCTTAAGAATTGAACGGTTGGCTGAGGAAATCCTTGATGAGGACTTGCCTGATGGATCTTCTTGGACAGTGGATTCATTTACTAAAGCCTTTGTCTCAAAGTTAAAATCAGTTTCTGGTGAGATCTTTGGATTGAAAAGCATAGCTGCATACCGCAGTGGCCTAGAAATCAATACTAATGTGACTAAAAAGGATGCTGAGGAGGGGCTGAGGCAGGTGTTGATTGCTGGGAAGCCTGTCCGTATTGCAAACAAAAATCTTATTGACTACATCTTCTTACAAAGTTTGGAAGTTGCTCAATCCTATGACTTGCCAATGCAGATACACACAGGCTTTGGGGATAAAGATTTGGACATGCGACTGTCCAATCCTCTTCATCTACGTGCAGTTCTTGAGGACAAGAGATATTTGAAGTCTCGGATTGTTCTTTTACATGCATCCTATCCATTCTCAAGGGAAGCGTCGTATCTAGCATCTGTTTACTCACAGGTCTACCTTGATTTTGGACTGGCAATTCCAAAGTTGAGTGTACATGGGATGATTTCTTCAATGAAAGAGCTATTGGAGCTGGCTCCAATAAATAAGGTGATGTTCAGTACTGATGGCTATGCATTTCCTGAAACATTTTACTTAGGTGCGAAGAAGTCTCGCGAAGTTGTTTTCTCTGTCCTACGTGATGCATGCATTGATGGTGATCTCTCAATTCCTGAGGCTGTGGAAGTTGCAAAGGACATCTTTGCTCGAAATGCAATCCACTTCTACAAGATTAGTTCAGCTATTGGTGTTGTTAGTTCACATAGTAATTTGCCCCAAAAGCTGAATGATGGCTTAGACATTGATTTGTCACTTGTTCGTATCTTGTGGGTTGATGGTTCAGGACAGCATAGATGTCGTGCGGTTCCTAAAAAACGCTTCAATGATATTGTTGCAAAGAATGGGGTTGGCTTAGCATTTGCGACTTTGGGATTCTCTTCTTATATGGATGGACCTGCAGACGGGTCTGGTCTAACTGCAGTTGGTGAAACAAGATTAATGCCTGATTTGTCTACTCTAACAAGAATTCCATGGAACAAGCAAGATGAAATGGTTTTAGCTGATATGTGTGTTAAACCTGGTGAAGCTTGGGAATATTGCCCAAGAGACGCCTTAAGAAGAGCTTCTAAAATTCTGAAAGATGAATTTGACTTGGAAATGAATGCAGGATTTGAGAATGAATTTATCCTCTTAAAGAGCATAACAAGGGAAGGTAAAGAGGAATGGATACCATTTGACTCGAGTCCATACTGCTCTTCATCGGCATTTGATGCTGCTTCCCCCATACTTCATGAAGTTGCTGCTTCTCTTCATTCCTTGGGCATTTCAGTAGAACAGTTACATGCTGAGGCTGGAAAAGGTCAATTTGAGCTGGTTTTGAAATATACCGTTTGTACTAAAGCTGCAGACAACTTAACTTTCACCCGTGAAGTTGTCAGGGCAATTGCTAGAAAGCATGGCTTGCTGGCAACCTTTATTCCAAAGTACGCATTAGATGATTTGGGTTCTGGATCCCATGTTCACCTTAGCTTGTCGCGAAATGGCCAAAATGTATATATGGCATCTGATAGATCATCTAAGCATGGAATATCAACTTTGGGAAAGGAATTTATGGCTGGAATTCTACATCATCTTCCTTCAATTTTGGCATTTATAGCACCACTCCCTAACAGTTATGATCGATTACAACCCAACACATGGAGTGGTGCATACCTTTTCTGGGGAAACGAAAATAAGGAGGCTCCATTGCGAGCTACGTCTCCACCTGGAACTCCTGATGGTCTAGTGAGCAACTTTGAGATGAAATCATTTGATGGTTCTGCCAATCCATACTTGGGCTTAGCTGCCATACTTGCTGCTGGCATTGATGGACTTCGTAGGAAGCTTTCTCTTCCTGAACCTGTTGATACAAATCCAAATCCGGAAACCCTTCAGAGATTGCCAGCATCACTTTCTGAATCTTTGGATGCTCTCAATAAGGATGACTTCCTTAAGGAATTTATGAGTGATAAGTTGCTAACTACCATAAAAGCAATCAGAAAGGCTGAAATTGATCATTACACGAAGCACAAGGATGCATACAAGCAACTCATACACCGTTATTGA
>Glyma10g06820.1 sequence type=predicted peptide gene model=Glyma10g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELSELRKAVEEVELVDAHAHNIVSLDSNFAFIHAFSEAYGDAVTFSPHTLSFKRNLREIAELYGSELSLQGVEEHRRVSGMQSICSTCFKAARISAILIDDGLQLDKKHDIEWHRSFTPLVGRILRIERLAEEILDEDLPDGSSWTVDSFTKAFVSKLKSVSGEIFGLKSIAAYRSGLEINTNVTKKDAEEGLRQVLIAGKPVRIANKNLIDYIFLQSLEVAQSYDLPMQIHTGFGDKDLDMRLSNPLHLRAVLEDKRYLKSRIVLLHASYPFSREASYLASVYSQVYLDFGLAIPKLSVHGMISSMKELLELAPINKVMFSTDGYAFPETFYLGAKKSREVVFSVLRDACIDGDLSIPEAVEVAKDIFARNAIHFYKISSAIGVVSSHSNLPQKLNDGLDIDLSLVRILWVDGSGQHRCRAVPKKRFNDIVAKNGVGLAFATLGFSSYMDGPADGSGLTAVGETRLMPDLSTLTRIPWNKQDEMVLADMCVKPGEAWEYCPRDALRRASKILKDEFDLEMNAGFENEFILLKSITREGKEEWIPFDSSPYCSSSAFDAASPILHEVAASLHSLGISVEQLHAEAGKGQFELVLKYTVCTKAADNLTFTREVVRAIARKHGLLATFIPKYALDDLGSGSHVHLSLSRNGQNVYMASDRSSKHGISTLGKEFMAGILHHLPSILAFIAPLPNSYDRLQPNTWSGAYLFWGNENKEAPLRATSPPGTPDGLVSNFEMKSFDGSANPYLGLAAILAAGIDGLRRKLSLPEPVDTNPNPETLQRLPASLSESLDALNKDDFLKEFMSDKLLTTIKAIRKAEIDHYTKHKDAYKQLIHRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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