Report for Sequence Feature Glyma10g06810
Feature Type: gene_model
Chromosome: Gm10
Start: 5545452
stop: 5551102
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g06810
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G53180 AT
Annotation by Michelle Graham. TAIR10: glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852
SoyBase E_val: 3.00E-159 ISS
GO:0002679 GO-bp
Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response
SoyBase N/A ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0006542 GO-bp
Annotation by Michelle Graham. GO Biological Process: glutamine biosynthetic process
SoyBase N/A ISS
GO:0006569 GO-bp
Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process
SoyBase N/A ISS
GO:0006807 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009399 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrogen fixation
SoyBase N/A ISS
GO:0009617 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to bacterium
SoyBase N/A ISS
GO:0009684 GO-bp
Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0010200 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to chitin
SoyBase N/A ISS
GO:0010311 GO-bp
Annotation by Michelle Graham. GO Biological Process: lateral root formation
SoyBase N/A ISS
GO:0048829 GO-bp
Annotation by Michelle Graham. GO Biological Process: root cap development
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004356 GO-mf
Annotation by Michelle Graham. GO Molecular Function: glutamate-ammonia ligase activity
SoyBase N/A ISS
GO:0008017 GO-mf
Annotation by Michelle Graham. GO Molecular Function: microtubule binding
SoyBase N/A ISS
GO:0043015 GO-mf
Annotation by Michelle Graham. GO Molecular Function: gamma-tubulin binding
SoyBase N/A ISS
GO:0043621 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein self-association
SoyBase N/A ISS
PTHR20852 Panther
GLUTAMINE SYNTHETASE
JGI ISS
PTHR20852:SF8 Panther
NODULIN / GLUTAMATE-AMMONIA LIGASE-LIKE PROTEIN
JGI ISS
PF04909 PFAM
Amidohydrolase
JGI ISS
UniRef100_Q8S4Q4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Nodulin 6l n=2 Tax=Glycine max RepID=Q8S4Q4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8S4Q4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nodulin 6l n=2 Tax=Glycine max RepID=Q8S4Q4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g06810
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g06810
Paralog Evidence Comments
Glyma13g20990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g06810 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g060100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g06810
Transcripts of Glyma10g06810
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g06810.2 sequence type=transcript gene model=Glyma10g06810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACTTTCTTTATTTTCGTGCGCATTTGATCGCTCTCTAACCCCCGCTGTCTCACTCATAGTCCTCTTGATTATCTCAATCCTCTGCAACCTTAAAGGACTCGAACATTCTTCACTGGTAGAGGGAGAGGGAATGGATTTCAGCGAGCTGAGAAAAGCAGTGGAGGAGGTTGAACTGGTGGATGGTCACTCCCATAACATAGTTGCCCTAAACTCCACCTCCATCTCCGGTTTTGTTCAGGCCTTTACTGTGGGAGCCTTTGTTGATGCTGATGCCATTGCTTTTGCACAAACCTCTCTATCCTTCAAGAGAAGTTTGAGAGATGTTGCTGAGCTATACGGAACCGAGGTATCTTTGCAAGGTGTAGAGGAATACCGTAAAGCGTCTGGAATAGAATCCATCAGCTCAACATGCCTCAAAGCTGCAAAATTCTCCGCCATACTCATTGATGATGGCATAGAAATGGACAAAAAGCATGACATGCAATGGCACAAAAATTTTACACCTTTTGTTGGCAGAATCTTAAGAACTGAACGTGTGGCCGAGCAAATCCTTGAACAAGGTTTGCCTAATGGATCTTCATGGACAATCGATTCATTTACTGAAGCATATGTCTCAAAGGTTAAATCAGTTGCTAAAGAGATCCATGCTTTGAAAAGCATAGCTGCATACTACGGTGGCTTAGAAATCAATTTAAATGTGACTAAAACGGATGCTGAGGAGAGTCTGAAAGAGGTGTTAACAAATACTACGAAACCTATTTTTCTACTAAAATACAAAAATTACAAAAATCTTGTTGACTACCTCTTCTTGCAAAGTTTGGAAATTGCTCTATCTTATGACTTGCCAATGCAGATACACACAGGCTTTGGGGATAGACTTTTGGATTTGAGGAAGACCAATCCTCTTCATCTCCGTTCAGTTCTTGAGGACAAGAGATATTCAAAGTGTCGGTTTGTTTTGTTACATGCATCTCATCCATACTCAAAGGAAGCATCATATCTAGCTTCTGTTTACTCCCAGGTTTACCTTGATTTTGGGTTGGCAATTCCAAAGCTTAGTGTACATGGGATGACTTCTGCAGTCAAAGATTTGCTAAATCTGGCTCCATTAGATAAGGTGATGTTCAGCACTGATGCCTATACATTTCCTGAAACCTTCTACCTAGGTGCAAAGAATTCTCGCGAAGTTGTTTTCTCTGTTCTGCATGATGCATGCATTGATGGTGAGCTCTCAATTCCTGAGGCTGTGGAAGCTGCAAAAGACATCCTTGCAAGAAATGCGATCCGCTTCTATAAGATTAGTTCACCCAACAATGCTGGCCCTCCTTAGTTTTTTTTTTTATTATTAAAGTGTCCCTGGAAGAACACGAACCCACAACCTTTCTCTTTTCTCTTCACTCTTTATCAACAACGGGATCATCCTTATATCTCCGAGGATAATTCAATAAAGTAATCATGTTGCATAATCGAAATGTTGAATACTTCTAGCTGCATTTATAATGTCATAACAATTAAACAATTCGTGAATTATTATGTCCACAATGATATATACTCGTTTATAAAACATCAATTATGATTTGTGTTTTGTTTAATTATGTCATTTCTTCTAAAATTTGATATATATCGTTGTGATCCTATGATATCTTAC
Coding sequences of Glyma10g06810
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g06810.1 sequence type=CDS gene model=Glyma10g06810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATATCTCATTGCCATTCACAGTCCTCTTGATTATCTCAATCCTCTGCAACCTTAAAGGACTCGAACATTCTTCACTGGTAGAGGGAGAGGGAATGGATTTCAGCGAGCTGAGAAAAGCAGTGGAGGAGGTTGAACTGGTGGATGGTCACTCCCATAACATAGTTGCCCTAAACTCCACCTCCATCTCCGGTTTTGTTCAGGCCTTTACTGTGGGAGCCTTTGTTGATGCTGATGCCATTGCTTTTGCACAAACCTCTCTATCCTTCAAGAGAAGTTTGAGAGATGTTGCTGAGCTATACGGAACCGAGGTATCTTTGCAAGGTGTAGAGGAATACCGTAAAGCGTCTGGAATAGAATCCATCAGCTCAACATGCCTCAAAGCTGCAAAATTCTCCGCCATACTCATTGATGATGGCATAGAAATGGACAAAAAGCATGACATGCAATGGCACAAAAATTTTACACCTTTTGTTGGCAGAATCTTAAGAACTGAACGTGTGGCCGAGCAAATCCTTGAACAAGGTTTGCCTAATGGATCTTCATGGACAATCGATTCATTTACTGAAGCATATGTCTCAAAGGTTAAATCAGTTGCTAAAGAGATCCATGCTTTGAAAAGCATAGCTGCATACTACGGTGGCTTAGAAATCAATTTAAATGTGACTAAAACGGATGCTGAGGAGAGTCTGAAAGAGGTGTTAACAAATACTACGAAACCTATTTTTCTACTAAAATACAAAAATTACAAAAATCTTGTTGACTACCTCTTCTTGCAAAGTTTGGAAATTGCTCTATCTTATGACTTGCCAATGCAGATACACACAGGCTTTGGGGATAGACTTTTGGATTTGAGGAAGACCAATCCTCTTCATCTCCGTTCAGTTCTTGAGGACAAGAGATATTCAAAGTGTCGGTTTGTTTTGTTACATGCATCTCATCCATACTCAAAGGAAGCATCATATCTAGCTTCTGTTTACTCCCAGGTTTACCTTGATTTTGGGTTGGCAATTCCAAAGCTTAGTGTACATGGGATGACTTCTGCAGTCAAAGATTTGCTAAATCTGGCTCCATTAGATAAGGTGATGTTCAGCACTGATGCCTATACATTTCCTGAAACCTTCTACCTAGGTGCAAAGAATTCTCGCGAAGTTGTTTTCTCTGTTCTGCATGATGCATGCATTGATGGTGAGCTCTCAATTCCTGAGGCTGTGGAAGCTGCAAAAGACATCCTTGCAAGAAATGCGATCCGCTTCTATAAGATTAGTTCACCCAACAATGCTGGCCCTCCTTAG
>Glyma10g06810.2 sequence type=CDS gene model=Glyma10g06810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTTCAGCGAGCTGAGAAAAGCAGTGGAGGAGGTTGAACTGGTGGATGGTCACTCCCATAACATAGTTGCCCTAAACTCCACCTCCATCTCCGGTTTTGTTCAGGCCTTTACTGTGGGAGCCTTTGTTGATGCTGATGCCATTGCTTTTGCACAAACCTCTCTATCCTTCAAGAGAAGTTTGAGAGATGTTGCTGAGCTATACGGAACCGAGGTATCTTTGCAAGGTGTAGAGGAATACCGTAAAGCGTCTGGAATAGAATCCATCAGCTCAACATGCCTCAAAGCTGCAAAATTCTCCGCCATACTCATTGATGATGGCATAGAAATGGACAAAAAGCATGACATGCAATGGCACAAAAATTTTACACCTTTTGTTGGCAGAATCTTAAGAACTGAACGTGTGGCCGAGCAAATCCTTGAACAAGGTTTGCCTAATGGATCTTCATGGACAATCGATTCATTTACTGAAGCATATGTCTCAAAGGTTAAATCAGTTGCTAAAGAGATCCATGCTTTGAAAAGCATAGCTGCATACTACGGTGGCTTAGAAATCAATTTAAATGTGACTAAAACGGATGCTGAGGAGAGTCTGAAAGAGGTGTTAACAAATACTACGAAACCTATTTTTCTACTAAAATACAAAAATTACAAAAATCTTGTTGACTACCTCTTCTTGCAAAGTTTGGAAATTGCTCTATCTTATGACTTGCCAATGCAGATACACACAGGCTTTGGGGATAGACTTTTGGATTTGAGGAAGACCAATCCTCTTCATCTCCGTTCAGTTCTTGAGGACAAGAGATATTCAAAGTGTCGGTTTGTTTTGTTACATGCATCTCATCCATACTCAAAGGAAGCATCATATCTAGCTTCTGTTTACTCCCAGGTTTACCTTGATTTTGGGTTGGCAATTCCAAAGCTTAGTGTACATGGGATGACTTCTGCAGTCAAAGATTTGCTAAATCTGGCTCCATTAGATAAGGTGATGTTCAGCACTGATGCCTATACATTTCCTGAAACCTTCTACCTAGGTGCAAAGAATTCTCGCGAAGTTGTTTTCTCTGTTCTGCATGATGCATGCATTGATGGTGAGCTCTCAATTCCTGAGGCTGTGGAAGCTGCAAAAGACATCCTTGCAAGAAATGCGATCCGCTTCTATAAGATTAGTTCACCCAACAATGCTGGCCCTCCTTAG
Predicted protein sequences of Glyma10g06810
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g06810.1 sequence type=predicted peptide gene model=Glyma10g06810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDISLPFTVLLIISILCNLKGLEHSSLVEGEGMDFSELRKAVEEVELVDGHSHNIVALNSTSISGFVQAFTVGAFVDADAIAFAQTSLSFKRSLRDVAELYGTEVSLQGVEEYRKASGIESISSTCLKAAKFSAILIDDGIEMDKKHDMQWHKNFTPFVGRILRTERVAEQILEQGLPNGSSWTIDSFTEAYVSKVKSVAKEIHALKSIAAYYGGLEINLNVTKTDAEESLKEVLTNTTKPIFLLKYKNYKNLVDYLFLQSLEIALSYDLPMQIHTGFGDRLLDLRKTNPLHLRSVLEDKRYSKCRFVLLHASHPYSKEASYLASVYSQVYLDFGLAIPKLSVHGMTSAVKDLLNLAPLDKVMFSTDAYTFPETFYLGAKNSREVVFSVLHDACIDGELSIPEAVEAAKDILARNAIRFYKISSPNNAGPP*
>Glyma10g06810.2 sequence type=predicted peptide gene model=Glyma10g06810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDFSELRKAVEEVELVDGHSHNIVALNSTSISGFVQAFTVGAFVDADAIAFAQTSLSFKRSLRDVAELYGTEVSLQGVEEYRKASGIESISSTCLKAAKFSAILIDDGIEMDKKHDMQWHKNFTPFVGRILRTERVAEQILEQGLPNGSSWTIDSFTEAYVSKVKSVAKEIHALKSIAAYYGGLEINLNVTKTDAEESLKEVLTNTTKPIFLLKYKNYKNLVDYLFLQSLEIALSYDLPMQIHTGFGDRLLDLRKTNPLHLRSVLEDKRYSKCRFVLLHASHPYSKEASYLASVYSQVYLDFGLAIPKLSVHGMTSAVKDLLNLAPLDKVMFSTDAYTFPETFYLGAKNSREVVFSVLHDACIDGELSIPEAVEAAKDILARNAIRFYKISSPNNAGPP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
