Glyma10g06800 - SoyBase

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Report for Sequence Feature Glyma10g06800

Feature Type:	gene_model
Chromosome:	Gm10
Start:	5502093
stop:	5516322
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g06800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09920	AT	Annotation by Michelle Graham. TAIR10: phosphatidyl inositol monophosphate 5 kinase \| chr3:3040426-3043676 REVERSE LENGTH=815	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0046488	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016307	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phosphate kinase activity	SoyBase	N/A	ISS
GO:0016308	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity	SoyBase	N/A	ISS
KOG0229	KOG	Phosphatidylinositol-4-phosphate 5-kinase	JGI		ISS
PTHR23086	Panther	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE	JGI		ISS
PTHR23086:SF6	Panther	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE	JGI		ISS
PF01504	PFAM	Phosphatidylinositol-4-phosphate 5-Kinase	JGI		ISS
PF02493	PFAM	MORN repeat	JGI		ISS
UniRef100_B9S0D1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol-4-phosphate 5-kinase, putative n=1 Tax=Ricinus communis RepID=B9S0D1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L919	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L919_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g06800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g06800

Paralog	Evidence	Comments
Glyma13g20980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g06800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g060000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g06800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g06800

Limit To All Plant Sequences

>Glyma10g06800.1   sequence type=CDS   gene model=Glyma10g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGCCCTGTGGCCACAGTTGATAATTTGGATGGAGCACTTTCTTGTGCAGAGAGAACAAAATCTCTTGATGCCATTTCTGAAATAGATCATTTATCTATATTTACAAACGGTGAAGCTGGTCATTCCTCTGAAGTTGCTGGATTTAGAGTAGGGGAACTCTCACTTCCTAATGGAGAATCATATTCTGGGTCCCTTCTTGGTAACATTCCAGAGGGTCAAGGTAAGTATGTATGGCCAGATGGTTGTGTATACGAGGGTGAGTGGAGACGAGGGATGAGAAATGGATATGGGAAAATACAATGGCCTTCTGGAGTAATGTATGATGGTGAGTTCTCAGGTGGCTATATCCATGGTACAGGAACATATATTGGCCCTGATAATCTGACCTACAAAGGTCGGTGGCGATTAAATGTTAAACATGGGTTGGGTTATCAAGTTTATCCAAATGGAGATATATTTGAAGGCTCTTGGATTCAAGGAACACCTGAGGGGCCAGGCAAGTATACCTGGGCCAACGGAAATGTATATTTGGGAAATATGAAAGGTGGGAGAATGTCAGGAAAAGGAACTCTCACCTGGGTAAGTGGGGACTCATTTGAAGGAAGCTGGTTAAATGGCATGATGCATGGGCTTGGGGCATATACATGGAGTGATGGAGGCTGCTATGTTGGGACTTGGACACGGGGTCTAAAAGATGGCAAAGGAACCTTCTATCCGAGAGGTAGCTGTCTTCCATCTGCACAAGAAATATATCTCAATGCATTGAGAAAAAGAGGGCTGTTGCCAGATTTGAGAAAACAGAAACAGATACATATTCATCATGCTGCTTCAGTTGATATGGGAGATGTCAAGGTTGGTGAAAGTCAGAGATCAAATCGTGTTTCATCTGATAAGCTCGCCAAAGGAAACTTGTTAAATCTGGAACAATCTCGTAGCAAAAATATTTCTCTCGAAAGGCGCTGGAGTCTTGAGGTATCTATTGAGAAAGTGATTGGGCATGATTCAAGATTAGGATCAACAGATTCTGTAGCAGAAAATGGAGATAAAGTCCCAATTTTGGAACGCGAGTATATGCAAGGTGTGTTAATAAGTGAATTAGTTTTAAATAATAGTTTTTCATCAATGTCTAGAAGGGCAAAACAGCTCCAAAAAAAACTTGCCAAAGAAATTAAAAGACCTGGTGAAGCAATCATTAAAGGTCACCGGAGCTATGATCTGATGCTTAGTTTGCAGCTCGGAATAAGGTATACTGTGGGGAAGATTACCCCAATACAGAGACGAGAAGTTCGAGCATCAGATTTTGGTCCTAGAGCAAGCTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTGTTCAGAAATTTGAGAGAGTTGTTCAAGATTGATGCTGCTGACTATATGATGTCCATTTGTGGAAATGATGCTCTGAGGGAACTTTCTTCTCCAGGGAAAAGTGGTAGTGTCTTTTTCCTGTCTCAAGATGATCGATTCATGATTAAGACACTGCGAAGATCTGAAGTGAAGGTTCTTCTAAGAATGCTTCCAGACTATCATCACCATGTGAAGACATATGATAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTATACCTTCGAGTGGTCAAAAGTTTCGCTTTGTCGTGATGGGAAATATGTTCTGCACAGAATTAAGGATCCATAGGAGATATGATTTGAAAGGTTCATCTCTTGGACGTTCTTCGGACAAGATAGAAATTGATGAAAACACCACTCTTAAAGATTTGGATCTGAACTACTGCTTTTACTTGGAACCATCTTGGCAGGAGTCTTTATTGAAGCAGATTGAGATTGACAGCAAGTTTTTGGAATTACAACAGATAATGGATTACAGCCTCCTCCTAGGTGTTCATTATCGAGCTCCCCAGCAGCTGCATCCATACAACCAAAATAGAACTGCAGATGGATTGCCAATTCTTGCAGAGGAAGACCCTCTAGAGGATGAAGGATCCAACTATCCACAAGGCCTTGTTCTGGTCCCTCGGGGTACAGATGATGATAGTGTTGTTGTAGGGTCACACATTAGGGGTAGCAGATTGCGAGCTTCGGCTGCTGGGGATGAGGAGGTGGATCTACTTCTACCCGGTACAGCAAGACTACAAATCCAGCTAGGTGTGAACATGCCAGCGAGGGCAGAACAGATTCCAGGAAAAGAGGAAATGCAAATGTTCCATGAGGCTTATGATGTCGTACTTTACCTGGGTATAATTGACATATTGCAAGAGTACAACATGACTAAGAAGATTGAACATGCATACAAATCAATTCAGTTCGATTCATTGTCTATCTCGGCAGTGGATCCAACATTCTACTCGCGTCGCTTCCTGGATTTTATTCAGAAAGTGTTCCCACCACATGAAATGGCAGGATAA

Predicted protein sequences of Glyma10g06800

Limit To All Plant Sequences

>Glyma10g06800.1   sequence type=predicted peptide   gene model=Glyma10g06800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGPVATVDNLDGALSCAERTKSLDAISEIDHLSIFTNGEAGHSSEVAGFRVGELSLPNGESYSGSLLGNIPEGQGKYVWPDGCVYEGEWRRGMRNGYGKIQWPSGVMYDGEFSGGYIHGTGTYIGPDNLTYKGRWRLNVKHGLGYQVYPNGDIFEGSWIQGTPEGPGKYTWANGNVYLGNMKGGRMSGKGTLTWVSGDSFEGSWLNGMMHGLGAYTWSDGGCYVGTWTRGLKDGKGTFYPRGSCLPSAQEIYLNALRKRGLLPDLRKQKQIHIHHAASVDMGDVKVGESQRSNRVSSDKLAKGNLLNLEQSRSKNISLERRWSLEVSIEKVIGHDSRLGSTDSVAENGDKVPILEREYMQGVLISELVLNNSFSSMSRRAKQLQKKLAKEIKRPGEAIIKGHRSYDLMLSLQLGIRYTVGKITPIQRREVRASDFGPRASFWMNFPKEGSQLTPPHQSEGFKWKDYCPMVFRNLRELFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRRSEVKVLLRMLPDYHHHVKTYDNTLITKFFGLHRIIPSSGQKFRFVVMGNMFCTELRIHRRYDLKGSSLGRSSDKIEIDENTTLKDLDLNYCFYLEPSWQESLLKQIEIDSKFLELQQIMDYSLLLGVHYRAPQQLHPYNQNRTADGLPILAEEDPLEDEGSNYPQGLVLVPRGTDDDSVVVGSHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPARAEQIPGKEEMQMFHEAYDVVLYLGIIDILQEYNMTKKIEHAYKSIQFDSLSISAVDPTFYSRRFLDFIQKVFPPHEMAG*

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