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Report for Sequence Feature Glyma10g06730

Feature Type:gene_model
Chromosome:Gm10
Start:5458417
stop:5462187
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08080AT Annotation by Michelle Graham. TAIR10: alpha carbonic anhydrase 7 | chr1:2517022-2518546 REVERSE LENGTH=275 SoyBaseE_val: 4.00E-81ISS
GO:0006730GO-bp Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004089GO-mf Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0382 KOG Carbonic anhydrase JGI ISS
PTHR18952Panther CARBONIC ANHYDRASE JGI ISS
PTHR18952:SF2Panther gb def: similar to carbonic anhydrase va, mitochondrial precursor, carbonic anhydrase v, JGI ISS
PF00194PFAM Eukaryotic-type carbonic anhydrase JGI ISS
UniRef100_B9S0D9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Carbonic anhydrase, putative n=1 Tax=Ricinus communis RepID=B9S0D9_RICCO SoyBaseE_val: 1.00E-102ISS
UniRef100_I1L914UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L914_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g059400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g06730.2   sequence type=CDS   gene model=Glyma10g06730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCCTCAGTCATTGTTTCTCTTTCACATCTAACAAGCATGAAGCTTCAAAGAGTGAATACATATATAATTCCACATTTACTCGTGCTTTTCATGATCTTGTTAGCTTCAACATCAACAAGAGCACAAGTTGAAGAACTTGAGGACGAGAGAGAGTTCGATTATATTGGAGCAAGTGAAAAGGGGCCTCGTCACTGGGGAGAGATGAAAAAAGAATGGTCATCTTGTAAAAATGGACACTTGCAATCTCCCATAGACTTGTCATGTGCAAGAGTCAAAATTATCCCTCGATGTCGCCAACCTGATATATACTACACAGCTACTAATGCCACTATCATCAACAGAGGCCATGATATTGCTGTATATTGGAAGGATGATGCTGGTTCAGTATACCTCAATGGAACCGAATACTTTCTGAAACAATGTCATTGGCACTCTCCTTCGGAACATTCCATGAATGGCAGGAGATATGACTTGGAGATGCACATGGTGCATGTAAGTCCGGACAACAAGATTTTTGTGGTTGGAGCTCTCTATAAGTTTGGTCATCGTCCTGATCGTTTTCTCTCTCAGTTGGAGAAAGACATAAAGCACCTGGTTGATAATGAAGTAGAAAGAGAAATTGGAGAGACAAATCCCTCAGGATTACAGACAAGAGGCAATGCGTATTACAGATACGTAGGCTCACTCACCACTCCTCCTTGTACTGAAGGTGTCATCTGGAACATTGATAGAAAGATTAGGACAGTTTCGGAAGAACAAGTGAGGCTTTTGAGGGAGGCAGTGCATGACCATGCAGAGAGGAATGCAAGGCCAATGCAGCGACGTTACAATCGAGATATATTATACTTCCGATCCAAAAGCAGAGCAAAACCAGAATATTATTAA

>Glyma10g06730.2   sequence type=predicted peptide   gene model=Glyma10g06730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASVIVSLSHLTSMKLQRVNTYIIPHLLVLFMILLASTSTRAQVEELEDEREFDYIGASEKGPRHWGEMKKEWSSCKNGHLQSPIDLSCARVKIIPRCRQPDIYYTATNATIINRGHDIAVYWKDDAGSVYLNGTEYFLKQCHWHSPSEHSMNGRRYDLEMHMVHVSPDNKIFVVGALYKFGHRPDRFLSQLEKDIKHLVDNEVEREIGETNPSGLQTRGNAYYRYVGSLTTPPCTEGVIWNIDRKIRTVSEEQVRLLREAVHDHAERNARPMQRRYNRDILYFRSKSRAKPEYY*







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