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Report for Sequence Feature Glyma10g06610

Feature Type:gene_model
Chromosome:Gm10
Start:5342873
stop:5351900
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g06610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03280AT Annotation by Michelle Graham. TAIR10: NRAMP metal ion transporter family protein | chr5:788589-793066 FORWARD LENGTH=1294 SoyBaseE_val: 0ISS
GO:0001736GO-bp Annotation by Michelle Graham. GO Biological Process: establishment of planar polarity SoyBaseN/AISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006869GO-bp Annotation by Michelle Graham. GO Biological Process: lipid transport SoyBaseN/AISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009725GO-bp Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009755GO-bp Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway SoyBaseN/AISS
GO:0009789GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009871GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0009926GO-bp Annotation by Michelle Graham. GO Biological Process: auxin polar transport SoyBaseN/AISS
GO:0010119GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010351GO-bp Annotation by Michelle Graham. GO Biological Process: lithium ion transport SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0052544GO-bp Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition in cell wall SoyBaseN/AISS
GO:0071281GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1291 KOG Mn2+ and Fe2+ transporters of the NRAMP family JGI ISS
PTHR11706Panther MANGANESE TRANSPORTER JGI ISS
PTHR11706:SF4Panther ETHYLENE INSENSITIVE PROTEIN 2 (EIN-2) (ATEIN2) (CYTOKININ RESISTANT PROTEIN ATCKR1) (MANGANESE TRANSPORTER) JGI ISS
PF01566PFAM Natural resistance-associated macrophage protein JGI ISS
UniRef100_B3GN62UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sickle n=1 Tax=Medicago truncatula RepID=B3GN62_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1L906UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L906_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g06610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g06610
ParalogEvidenceComments
Glyma13g20810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g06610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g058300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g06610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g06610
>Glyma10g06610.1   sequence type=CDS   gene model=Glyma10g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGAGACTTTGAACGCAAATCACCCTCCCGGTTTTCTTCACCGGTCGCTTCCTGCTGTTGTGCCTATGCTTTTGATTTCAATAGGATATGTTGACCCTGGAAAGTGGGTGGCAATTGCTGAAGGAGGTGCACGATTTGGGTTCGATCTGATGGCCTTCACACTTATCTTTAATCTTGCTGCCATCTTCTGTCAGTACATAGCAGCAAAAATTGGTGTTATCACAGGAAAAGATCTTGCTCAGATTTGCAGTGATGAGTACGATAATTGGACGTGCATGCTTCTTGGAGTTCAAGCAGAACTTTCGGTGATTATGCTAGACCTTAACATGATATTGGGCATGGCACATGGATTAAATATTCTTTTTGGGTGGGACTTGTTCACTTGTGTCTTTTTAACTGCTACTGGTGCTGTTTTCCATCTCCTTCTTTTTGTCATCCTTGACATTGAGAAGGCAAAGATCCTGGGACTGTTTGTGTCAGGTTTTGTATTTCTTTCATTTGTACTTGGAACACTCATTAATCAACCAGACATTCCATTATCCATTAATGGAATACTAACAAAGTTGAATGGGGAGAGTGCATTTGTGCTGATGAGTCTATTAGGAGCAATTCTTGTGCCTCACAACTTCTACCTTCATTCCTCTATTGTACAGTGGCATCAGGGATCAACTACCATTTCTAAGGATGCTTTGTGTCATAACCATTTTTTGGCCATCATGTGTGTCTTCAGTGGCCTTTATTTGGTCAATAATGTGCTGATGAATGCTGCAGCAAATGAGTTCTACAGTATGGGTCTTGTTTTGACTACTTTTCAGGACGCATTATCGCCAATGGAACAGGTGTTGCGTAGTCCAATAGCCATGCTTGCTTTTTTACTCATTCTGTTTTTTTCAAATCAAACCACAGCATTAACTTGGAGTTTCGGTGGAGAAGTAGTAGTGCGAAATTTCTTAAAATTGGATATTCCGGGTTGGCTTCATTATGCTACAATTAGAGTAATTGCTGTTCTGCCTGCCCTTTATTGCGTTTGGAATTCAGGAGCTGAAGGGATGTATCAACTACTTATATTCACTCAGATTGTGGTAGCTCTGCAACTTCCTTCTTCTGTGATCCCCCTTTTTCGGATCGCCTCATCTAGATCAATAATGGGGGTACACAAGATCCCTCAATTTGTGGAATTTTTGGCATTGATCATATTCATTGGGATGCTTGGCTTGAATATTGTCTTTGTTGTAGAAATGGTATTTGGCAGTAGTGATTGGGTGGGCAATTTGAGATGGAATGTGGAGACTGGTGTGTCTCTCTCTTATTTGGTCCTTCTGTGCACTGCTTTTGCATCTTTCTGTCTGATGCTTTGGTTAGCTGCCACACCTTTAAAATCTGCAAGTGTTCAATTGGATGATCAGGCATGGAACTGGGACATGCCACAAGCCATACCAAAGTCACGGATTGATAACGAGGAAACAGATTTAAAAGAAACAAGATATCATGGAGATGCATCAGTTCAGGTGAAGGAACCATCACCAGTTCTAGCAAGGACCCTGGAATACTCAGATGTACCAATTGCAAGTTTTCATCATGATCTACCTGAAACTATCATGGAGCCTGATGTTCCTGTGACTACTGTAAGGGAGACTCATCCATTTACATCATTTCCTTTCTCCCCAACTTCTGTTGTTAAGGAATCAGCTTCCACTTCAGAATCAGAGGCAGTACCAGCTGTAAGTAATGAGACTTCTGATATTATATTGGGAGATTCCAAAACTTTGAAAACAGAAACTACTGCCCCTGTTGAGAAAACTGTAGAAGTTGAGGGAGATTCAAATGCCGAAAGGGATGATGATTATGGAGATTCATGGGAAACTGAAGAAATACCAAAAGTGGTCTCACTAGCCCCATCTTCAGCATCAGATGGCCCAGCATCATTCAGGAGCCTTAGTGGGAAAAGTGATGATGGAGGGAATAGCATTGGAAGTCTTTCAAGATTAGCAGGTTTAGGGCGCGGTGCAAGACGTCAACTAGCTGCTATTCTTGATGAATTCTGGGGACAACTTTTTCATTTCCATGGTCAATTTACCCAGGAAGCTAAGGCCAAGAAACTTGATGTTTTACTGGGAGTAGATTCAACACTCACTGGTTCTTTGCAAAAAATGGATTCATGTAAGGCATGTTATGAATACTTCAAATCTGTAGGAAGTAGAGCTCCAGATACTTTAATGAACTCTGCTCCATATGAATCTCCCAGGCTGAATAGGATGCAAAGTAATTTAGAGGCTTCCTTTGGGCCTCAAAGGAGTTCTTCCTCACTGCAGGCAAATCCTGTCCAGTTTATGGATGAATATGTTCAGACCTCCAGCCGCAATCTCCTTGATGCTGGTGAAAGGCGCTATTTTAGTGTGCACAATCTACCTACATCTGCAGCCTGGGATTATCAGCCAGCTACCATACATGGTTATCAGGTTTCATCATATATTAATCAAGTTGGTAAAGACACAAATTCTGATAAATTAAATGGTCTGAGGGAATCCCCTTCCATGGGTAATACAAACAACTACAGGAATTCTATTGCATTTGCTTTGGGTAAAAAGTTGCAAAACGGTTCTGGTTTAAGCCAACCCCCAGGATTCCCGAACATTGCTGTCTCTAAGAATAGCCAATTGCCATCTGAGAGGTCCTATTATGATTCTCGCCCTTCCGGACCTGTGGATAGTACAGTCAGTTCAGTCTATGCTAAGAAGTTCCACAGCTTGCCAGACATTTCAGGATATGCCATCCCTCACAGGGATGTTTACCTGTCTGATAAAAGTGCTCCATGGGATGATTCTGTTGGTGGATATAGATCTTCTGCAAGTAGGACTCATTATGAACCGTCATTATATTCAAATTCTGGATCAAGTACAGGAGCTCCTTTAGCCTTTGATGTACTCTCTCCATCAAAAGTCTACGGTGGTGTACTTTCTTCTCAGTTGAGTTCTGGTTTTGGCACTGGATCCCTCTGGTCCAGACAGCCTTTTGAGCAGTTTGGGGTGGATGATAAAATTCATAATGCTGCAACAGAAGATGTTGGAAATAGGCCTAGTGCAACTACTCATGAAATTACTTCAGTTGTGGATATTGATGGCAAGCTTCTTCAATCTTTTAGACAATGTATTTTGAAACTCTTAAAATTGGAAGGGTCTGATTGGTTGTTTAAACAGAATGATGGGGCTGATGAAGATCTGATTGACCGTGTTGCTGCAAGGGAGAAATTTGTTTATGAAATTGAAACCACAGAGATGAACCGCAATCATATGGGAGAAACTCGATATCTTTCTTCTGATGGGAAGGCTTGTTCTTCAATGAAGAATAATGAGGCAAATTGGTCTAGTTTTTCTGTAACCTCAATCCCTAACTGTGGGGAAGGATGTGTTTGGAGAGCAGATATAATAATAAGCTTTGGAGTGTGGTGTATCAAACGTGTTCTGGACCTCTCCCTAATGGAGAGCCGACCAGAGCTGTGGGGGAAGTACACTTATGTACTCAATCGCCTCCAGGGCATCATTGATCTGGCTTTCTCCAAGCCTCGTAGTCCCATGACCCCATGCTTTTGCCTTCAAGTTCCCATGACTTACCAGCAGAAGTCAAGCTCGCCTCCTTCCAATGGGATGCTGCCCCCTGCGTCAAAACCGGGCCGTGGAAAATGCACAACTGCATCAGTGGTGTTTGAGATGGTCAAGGATGTGGAGATAGCAATCTCCAGCCGGAAAGGTCGCACAGGAACCGCTGCTGGTGACGTAGCCTTCCCAAAGGGAAAGGAGAATTTGGCATCTGTTCTCAAACGGTATAAGCGTAGATTATCCAACAAACCAGTTGGCACTACTCAAGAAGGGATTCGCAAGATATACTTGTAG
Predicted protein sequences of Glyma10g06610
>Glyma10g06610.1   sequence type=predicted peptide   gene model=Glyma10g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAETLNANHPPGFLHRSLPAVVPMLLISIGYVDPGKWVAIAEGGARFGFDLMAFTLIFNLAAIFCQYIAAKIGVITGKDLAQICSDEYDNWTCMLLGVQAELSVIMLDLNMILGMAHGLNILFGWDLFTCVFLTATGAVFHLLLFVILDIEKAKILGLFVSGFVFLSFVLGTLINQPDIPLSINGILTKLNGESAFVLMSLLGAILVPHNFYLHSSIVQWHQGSTTISKDALCHNHFLAIMCVFSGLYLVNNVLMNAAANEFYSMGLVLTTFQDALSPMEQVLRSPIAMLAFLLILFFSNQTTALTWSFGGEVVVRNFLKLDIPGWLHYATIRVIAVLPALYCVWNSGAEGMYQLLIFTQIVVALQLPSSVIPLFRIASSRSIMGVHKIPQFVEFLALIIFIGMLGLNIVFVVEMVFGSSDWVGNLRWNVETGVSLSYLVLLCTAFASFCLMLWLAATPLKSASVQLDDQAWNWDMPQAIPKSRIDNEETDLKETRYHGDASVQVKEPSPVLARTLEYSDVPIASFHHDLPETIMEPDVPVTTVRETHPFTSFPFSPTSVVKESASTSESEAVPAVSNETSDIILGDSKTLKTETTAPVEKTVEVEGDSNAERDDDYGDSWETEEIPKVVSLAPSSASDGPASFRSLSGKSDDGGNSIGSLSRLAGLGRGARRQLAAILDEFWGQLFHFHGQFTQEAKAKKLDVLLGVDSTLTGSLQKMDSCKACYEYFKSVGSRAPDTLMNSAPYESPRLNRMQSNLEASFGPQRSSSSLQANPVQFMDEYVQTSSRNLLDAGERRYFSVHNLPTSAAWDYQPATIHGYQVSSYINQVGKDTNSDKLNGLRESPSMGNTNNYRNSIAFALGKKLQNGSGLSQPPGFPNIAVSKNSQLPSERSYYDSRPSGPVDSTVSSVYAKKFHSLPDISGYAIPHRDVYLSDKSAPWDDSVGGYRSSASRTHYEPSLYSNSGSSTGAPLAFDVLSPSKVYGGVLSSQLSSGFGTGSLWSRQPFEQFGVDDKIHNAATEDVGNRPSATTHEITSVVDIDGKLLQSFRQCILKLLKLEGSDWLFKQNDGADEDLIDRVAAREKFVYEIETTEMNRNHMGETRYLSSDGKACSSMKNNEANWSSFSVTSIPNCGEGCVWRADIIISFGVWCIKRVLDLSLMESRPELWGKYTYVLNRLQGIIDLAFSKPRSPMTPCFCLQVPMTYQQKSSSPPSNGMLPPASKPGRGKCTTASVVFEMVKDVEIAISSRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSNKPVGTTQEGIRKIYL*






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