Report for Sequence Feature Glyma10g06590
Feature Type: gene_model
Chromosome: Gm10
Start: 5297795
stop: 5302874
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g06590
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G03290 AT
Annotation by Michelle Graham. TAIR10: isocitrate dehydrogenase V | chr5:794043-795939 FORWARD LENGTH=374
SoyBase E_val: 0 ISS
GO:0006099 GO-bp
Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle
SoyBase N/A ISS
GO:0006102 GO-bp
Annotation by Michelle Graham. GO Biological Process: isocitrate metabolic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009735 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus
SoyBase N/A ISS
GO:0009744 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus
SoyBase N/A ISS
GO:0009749 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus
SoyBase N/A ISS
GO:0009750 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus
SoyBase N/A ISS
GO:0043161 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0043248 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasome assembly
SoyBase N/A ISS
GO:0048767 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair elongation
SoyBase N/A ISS
GO:0051788 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to misfolded protein
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0000287 GO-mf
Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding
SoyBase N/A ISS
GO:0004449 GO-mf
Annotation by Michelle Graham. GO Molecular Function: isocitrate dehydrogenase (NAD+) activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0016616 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
SoyBase N/A ISS
GO:0051287 GO-mf
Annotation by Michelle Graham. GO Molecular Function: NAD binding
SoyBase N/A ISS
KOG0785
KOG
Isocitrate dehydrogenase, alpha subunit
JGI ISS
PTHR11835 Panther
DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
JGI ISS
PTHR11835:SF5 Panther
3-ISOPROPYLMALATE DEHYDROGENASE
JGI ISS
PF00180 PFAM
Isocitrate/isopropylmalate dehydrogenase
JGI ISS
UniRef100_G7J6B4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Isocitrate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7J6B4_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1L903 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L903_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g06590
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g06590
Paralog Evidence Comments
Glyma13g20790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g06590 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g058100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g06590
Transcripts of Glyma10g06590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g06590.2 sequence type=transcript gene model=Glyma10g06590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACATCATTCCTCAATTATAAAAAAAAACTTGTCTGAAATCAGTTTTTGTCAACACATTTTAATTTGATCTATATTAGTGTTACCCTTGAGAAGACTCTTCAACTGGTGATTTAACCGAACAATCCGATATTTGCTTCCTATTGGAATCAAGTATTAACCCTTTTGTCTCTGAATACTCTCTACTCAATACATTGCGCTCTAGTCTCGTCTCAAATATTAATTTTAGGTTCTTCGTTACGCGTTGTGTTGCGTTGTGCGTGAGAAAGTGCGCGTGGTGAAAAAGCATGGCTTCTCAGCTCCTGAGACGAACCTTCGGAAGTCGTTTCCTTGCAAACCCTAGGGCCTTCTCCTCCGCTGCTTCCACTCCGATCCGCGCCACTCTCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAACTGAAATTGACCCTAGAACGCAGAGCTTTCTGACATGGGAAAGTTTAGAATCTGTAAGGAAAAATAAGGTTGGCTTGAAAGGGCCAATGGCCACCCCTATTGGAAAAGGGCATCGTTCGTTAAATCTTACTCTGAGAAAAGAGCTCAATTTGTATGCCAATGTTCGACCTTGCTACAGTCTTCCAGGCTACAAAACTCGATATGATAATGTCAATCTAATTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTTTAAGGGTAGCTGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTTTGTGCTGGCTTGATTGGAGGATTGGGCTTAACACCAAGGTATTTTTTGTATTTTATCCAAAGAAATGTTAAGCTCACAATTATATCAATCTGAGAATGTTTTATGTCTTTTGCAGCTGCAACATTGGTGAGGGCGGTATTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGCCATTTGGACCTCCACGACAAAGCAGAACAGATTCAGAAAGCTATCCTCAACACGATTGCAGAAGGGAAGTACCGAACAGCTGATCTCGGTGGCAGTTCAAAGACAACTGAATTCACAAAAGCAATCATTGATCATCTTTAAATTTTGGTTGGAGTCAGCAAGAAATTCTTGCTTATGATTTTGATTTTCAGTCAATTTTCTATCTATTTCCCCAATTAATCGGAAAGAATGGGATTACCTCAGCTTAAAGGAAAACTCACCCATGTTTGTGTGACATTTTACAACCAAAGACAAGGAATGGGCAGGGATTCAAATATTCGTTGCCCAGTGCAGTCTTATGGCATTGAGAGGACACCCTTTCACAATGCACATTGATTGATAACCCTTGGTAGTCCGTTTTAGTATTCTTTGTCAATAATATAGTGCTAAATAAAAAAAACACCAGATGATGTTTCATTTGTTCATCTTTATCATCTTTCTTTGTGCAGGATATTGTTTGCTTTATTTTTTTTTATATTTAAAATCTTATTTAAAAAACAAAATGTGACTTGTTTGTGCTCCTTAACTTAAGACTTAATTGCAATGGTTGGGTTTTGTACCACAGGTCTACGTAATTATTCCAAACAAAGTCAAAGGCAATAATATACTTGATTTATGAT
Coding sequences of Glyma10g06590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g06590.1 sequence type=CDS gene model=Glyma10g06590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTCAGCTCCTGAGACGAACCTTCGGAAGTCGTTTCCTTGCAAACCCTAGGGCCTTCTCCTCCGCTGCTTCCACTCCGATCCGCGCCACTCTCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAACTGAAATTGACCCTAGAACGCAGAGCTTTCTGACATGGGAAAGTTTAGAATCTGTAAGGAAAAATAAGGTTGGCTTGAAAGGGCCAATGGCCACCCCTATTGGAAAAGGGCATCGTTCGTTAAATCTTACTCTGAGAAAAGAGCTCAATTTGTATGCCAATGTTCGACCTTGCTACAGTCTTCCAGGCTACAAAACTCGATATGATAATGTCAATCTAATTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTTTAAGGGTAGCTGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTTTGTGCTGGCTTGATTGGAGGATTGGGCTTAACACCAAGCTGCAACATTGGTGAGGGCGGTATTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGCCATTTGGACCTCCACGACAAAGCAGAACAGATTCAGAAAGCTATCCTCAACACGATTGCAGAAGGGAAGTACCGAACAGCTGATCTCGGTGGCAGTTCAAAGACAACTGAATTCACAAAAGCAATCATTGATCATCTTTAA
>Glyma10g06590.2 sequence type=CDS gene model=Glyma10g06590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTCAGCTCCTGAGACGAACCTTCGGAAGTCGTTTCCTTGCAAACCCTAGGGCCTTCTCCTCCGCTGCTTCCACTCCGATCCGCGCCACTCTCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGATTCCGTCAAACAGATATTCCAAGCAGCTGATGTCCCAATAGAATGGGAAGAGCACTATGTAGGAACTGAAATTGACCCTAGAACGCAGAGCTTTCTGACATGGGAAAGTTTAGAATCTGTAAGGAAAAATAAGGTTGGCTTGAAAGGGCCAATGGCCACCCCTATTGGAAAAGGGCATCGTTCGTTAAATCTTACTCTGAGAAAAGAGCTCAATTTGTATGCCAATGTTCGACCTTGCTACAGTCTTCCAGGCTACAAAACTCGATATGATAATGTCAATCTAATTACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGGTTGTGAGAGGTGTTGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTTTAAGGGTAGCTGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAGAGAGGGTTTCTGCCATACACAAAGCCAATATTATGCAAAAGACTGATGGCCTTTTCCTCAAGTGTTGCCGTGAGGTTGCAGAGAAATATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTTTGTGCTGGCTTGATTGGAGGATTGGGCTTAACACCAAGGTATTTTTTGTATTTTATCCAAAGAAATGTTAAGCTCACAATTATATCAATCTGA
Predicted protein sequences of Glyma10g06590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g06590.1 sequence type=predicted peptide gene model=Glyma10g06590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASQLLRRTFGSRFLANPRAFSSAASTPIRATLFPGDGIGPEIADSVKQIFQAADVPIEWEEHYVGTEIDPRTQSFLTWESLESVRKNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDNVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSGVTMLRHLDLHDKAEQIQKAILNTIAEGKYRTADLGGSSKTTEFTKAIIDHL*
>Glyma10g06590.2 sequence type=predicted peptide gene model=Glyma10g06590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASQLLRRTFGSRFLANPRAFSSAASTPIRATLFPGDGIGPEIADSVKQIFQAADVPIEWEEHYVGTEIDPRTQSFLTWESLESVRKNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDNVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPRYFLYFIQRNVKLTIISI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
