Glyma10g06530 - SoyBase

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Report for Sequence Feature Glyma10g06530

Feature Type:	gene_model
Chromosome:	Gm10
Start:	5224496
stop:	5231340
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g06530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03330	AT	Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein \| chr5:807728-809608 FORWARD LENGTH=356	SoyBase	E_val: 6.00E-107	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
KOG2605	KOG	OTU (ovarian tumor)-like cysteine protease	JGI		ISS
PTHR12419	Panther	UNCHARACTERIZED	JGI		ISS
PF02338	PFAM	OTU-like cysteine protease	JGI		ISS
UniRef100_G7IA91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-type peptidase n=1 Tax=Medicago truncatula RepID=G7IA91_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L8Z7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8Z7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g06530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g06530

Paralog	Evidence	Comments
Glyma13g20730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g06530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g057500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g06530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g06530

Limit To All Plant Sequences

>Glyma10g06530.1   sequence type=CDS   gene model=Glyma10g06530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTATATGAGCATCCAGATGTTGTGCAGTGGGGTATTAATCTTTTCAGTGACCCTGCTTATAGTCCTGGATACTACAGTGACATAATTCAACATGATACCGGTGATGTCTATAATGGACACTACTACCATAACCATTATGATACTGAAAGTAACCAAATACAAAATGATGAGATCATTGCACGGGCTCTTCAAGAAGAATTTTCCCGGCTAGATATTGCTGAGTGTTCAGGATATTCACAGACAGATGAAGAACAGTTCCATGCTTCTGAGCCTACATATGATTGGAATAATACATCGATGATGAACTATTGTTCAGGTCATGATTATGCTTACAACGGAGTTGGTGACATAGAACCTTCTAGTTCTTCATGTTGCAGTCCCTGTGAGCCAGAGGAAAGCTCATTGGAGCTTACAGACAACTATCCACTTGACGATGAAATAGGGAGGAGATTGAGCCAGATGGTTCCGACTCCTCATGTTCCAAAAATCAATGGAGAAATTCCTTCTATAGATGAAGCCTCTTCAGATCATCAAAGGCTTCTGGATAGATTGCAGTTATATGACTTTGTGGAGCATATGGTACAAGGTGATGGTAATTGTCAGTTTCGTGCGTTGTCTGATCAATTGTATAACACACCTGATCACCACAAATATGTGAGACGACAAGTTGTGAACCAGCTGAAGTCTCATCCAGAGATTTATGAGGGATATGTTCCCATGGAATATGACGAATATTTGGAGAAGATGTCTAAGAGTGGTGAATGGGGGGATCATGTCACCCTTCAAGCAGCTGCAGATTCGTATGGTGTGAGAATATTTGTGATAACTTCTTTCAAGGACACCTGTTGCATAGAGATACTTCCTCATTTTGAGAAGCCAAAAGGAGTGATTTTCCTTAGTTTTTGGGCAGAGGTGCATTACAACTCCATCTATCCTCAAGGAGATATACCTTCAAGTGAGTCAAGAAAGAAGAAAAAGTGGTGGAGCTTTGGGACTAAGCATTAA

Predicted protein sequences of Glyma10g06530

Limit To All Plant Sequences

>Glyma10g06530.1   sequence type=predicted peptide   gene model=Glyma10g06530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLYEHPDVVQWGINLFSDPAYSPGYYSDIIQHDTGDVYNGHYYHNHYDTESNQIQNDEIIARALQEEFSRLDIAECSGYSQTDEEQFHASEPTYDWNNTSMMNYCSGHDYAYNGVGDIEPSSSSCCSPCEPEESSLELTDNYPLDDEIGRRLSQMVPTPHVPKINGEIPSIDEASSDHQRLLDRLQLYDFVEHMVQGDGNCQFRALSDQLYNTPDHHKYVRRQVVNQLKSHPEIYEGYVPMEYDEYLEKMSKSGEWGDHVTLQAAADSYGVRIFVITSFKDTCCIEILPHFEKPKGVIFLSFWAEVHYNSIYPQGDIPSSESRKKKKWWSFGTKH*

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