Glyma10g06460 - SoyBase

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Report for Sequence Feature Glyma10g06460

Feature Type:	gene_model
Chromosome:	Gm10
Start:	5166287
stop:	5168421
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g06460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34340	AT	Annotation by Michelle Graham. TAIR10: TBP-associated factor 8 \| chr4:16426771-16427832 REVERSE LENGTH=353	SoyBase	E_val: 3.00E-77	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG2389	KOG	Predicted bromodomain transcription factor	JGI		ISS
PTHR23307	Panther	TBP-ASSOCIATED FACTOR TAF (TBN PROTEIN)	JGI		ISS
PF07524	PFAM	Bromodomain associated	JGI		ISS
PF10406	PFAM	Transcription factor TFIID complex subunit 8 C-term	JGI		ISS
UniRef100_B9SNR2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tbp-associated factor taf, putative n=1 Tax=Ricinus communis RepID=B9SNR2_RICCO	SoyBase	E_val: 7.00E-66	ISS
UniRef100_I1L8Z1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8Z1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g06460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g06460

Paralog	Evidence	Comments
Glyma13g20660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g06460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g056900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g06460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g06460

Limit To All Plant Sequences

>Glyma10g06460.1   sequence type=CDS   gene model=Glyma10g06460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAATGACGGGGCAAGAGCCGCGCCCGACGACTTCGGCCGCGCCGCCGCCCGCCTCGCCGTGGCTCAGCTCTGCGACGCCGCCGGGTTCCATGGCGCCACCGCCTCGGCTCTCGACGCCTTCGCCGACGTCGCCGTCCGCTACCTCCTCGACCTGGGCCGAACCGCCGAGTCCCACGCCAACCACGCCGGCCGCACTCAGTGCACCGTCTTCGACGCAATTCGCGGCATGGAAGACTTAGAAGCGCCGCGAGCCTTCGCCGGCGCCGGCGGCATCAGAGAGATCATAAACTTCGTCGAATCCGCTGCCGACGAAATTCCGTTCGCCCAATCGATTTCTAATTTTCCGGTTGTTCAGGAACGACGCCGCATCATCCCGAGTTTTGATCAGATGGGTGAGGCTCCACCGGCGAAGCATATACCCGCGTGGCTACCGGCTTTGCCCGATTCTCACACGTACATTCACACACCCGTGTGGGATGAAAGAGTCTCTGATCCTCGTGAGGATAAGATTGAACAAGCGAGACAGCGTAGGAAGGCTGAGAGGTCTTTGTTGAGTTTGCAGAAACGATTGTTGCTGCGTAATGGGTCGGTGGAATCAAAAGCAACAACATCAGCTTCACCGAATAGTGCTGCTTTGGATCCTCAAGTGGTTGGTGATGATGATGATAAGGTTGTTGAAAAGGATGTTGAGAAGGTTGTTAAGGTTTCGGTTTTGGATGATGATGGTGGTGGTGCTGGTGGTGATGGGAAGCGCGTTTCAGTGTTGGAGGCGTTTGGTCCTGCAATTAAGATGCTTGGGAGTGGAGGGTTGTGTGATGAGGATGATGATGGGTTGGGAGAGAAAGAAAAAAGTGAGCTTCCTGTTGTGAGGCCTACTGTGCATTTTAAGTTTAAAACTGGGAAGAAGCTTATTGGGGAGTCATTGGATATGAGAAATCGGAAGAAGGATGCGTTGCGGACGGCAGCATTGGCTGGGAGGGAAGATGAGAGGGATGATAAGAAAAGGAGGGCTGAGTATATTCTCAAACAGTCCATGGAGAATCCTCAGGAACTCACCTTGTTGTAG

Predicted protein sequences of Glyma10g06460

Limit To All Plant Sequences

>Glyma10g06460.1   sequence type=predicted peptide   gene model=Glyma10g06460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNDGARAAPDDFGRAAARLAVAQLCDAAGFHGATASALDAFADVAVRYLLDLGRTAESHANHAGRTQCTVFDAIRGMEDLEAPRAFAGAGGIREIINFVESAADEIPFAQSISNFPVVQERRRIIPSFDQMGEAPPAKHIPAWLPALPDSHTYIHTPVWDERVSDPREDKIEQARQRRKAERSLLSLQKRLLLRNGSVESKATTSASPNSAALDPQVVGDDDDKVVEKDVEKVVKVSVLDDDGGGAGGDGKRVSVLEAFGPAIKMLGSGGLCDEDDDGLGEKEKSELPVVRPTVHFKFKTGKKLIGESLDMRNRKKDALRTAALAGREDERDDKKRRAEYILKQSMENPQELTLL*

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