Glyma10g06450 - SoyBase

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Report for Sequence Feature Glyma10g06450

Feature Type:	gene_model
Chromosome:	Gm10
Start:	5158384
stop:	5160962
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g06450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09860	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:3026140-3027000 FORWARD LENGTH=98	SoyBase	E_val: 2.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1L8Z0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8Z0_SOYBN	SoyBase	E_val: 2.00E-67	ISS
UniRef100_Q9SF88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F8A24.9 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SF88_ARATH	SoyBase	E_val: 2.00E-25	ISS

Expression Patterns of Glyma10g06450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g06450

Paralog	Evidence	Comments
Glyma13g20650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g06450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g056800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g06450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g06450

Limit To All Plant Sequences

>Glyma10g06450.1   sequence type=CDS   gene model=Glyma10g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGTATTTCGGAAACGCTTATCGTGGCGACCCGGGAGTGCCCCATTCGGACCCGGATCGCTTCGTCAACATATGGGTCGGATCCGCTGCCTTCGCTGTTCTCACATATTTCAATCCCTACATGTGGCAGCTCTCTAATCAGTTCAATTGGCATGACAAAGCAATGCTATATGAGCAATATCACTGGAAACAGGCAAGGAAGAAGAATCAGCCATATGAGTTCATGTGGAACAAGACCTGGGACAAGAACCACCGGGAACATTACTACTACAACTGGCCTATTTACTTTCCTTAG

Predicted protein sequences of Glyma10g06450

Limit To All Plant Sequences

>Glyma10g06450.1   sequence type=predicted peptide   gene model=Glyma10g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKYFGNAYRGDPGVPHSDPDRFVNIWVGSAAFAVLTYFNPYMWQLSNQFNWHDKAMLYEQYHWKQARKKNQPYEFMWNKTWDKNHREHYYYNWPIYFP*

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