Report for Sequence Feature Glyma10g06402
Feature Type: gene_model
Chromosome: Gm10
Start: 5129316
stop: 5130129
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g06402
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G09870 AT
Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family | chr3:3027555-3027896 REVERSE LENGTH=113
SoyBase E_val: 7.00E-25 ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF02519 PFAM
Auxin responsive protein
JGI ISS
UniRef100_B9S0H7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0H7_RICCO
SoyBase E_val: 5.00E-32 ISS
UniRef100_UPI000233CC7C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233CC7C related cluster n=1 Tax=unknown RepID=UPI000233CC7C
SoyBase E_val: 1.00E-71 ISS
Expression Patterns of Glyma10g06402
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g06402
Paralog Evidence Comments
Glyma13g20630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g06402 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g056300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g06402
Coding sequences of Glyma10g06402
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g06402.1 sequence type=CDS gene model=Glyma10g06402 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTACACTTGCCACTTGCTCCAAACCGAGCACATAGAGTTCCCAAAAGCTCAAAATTCAAAAGCTTTCAAGTTCACCAACTCACCCTATATATCAAGAATAAAAAAAATAATTAGCACTGAGTTAAAGATGCTTAGGTCTTTTGTTGGGAAGATAGAAAAGGGTGTTTCACACTTTGTACACAGAAGGCCTCCACTGAACTACTTGAGTGAAGCCACAACAAGTGTGGTGCCAGATGATGTTAGGGAAGGATATTTTGCTGTACTTGCAATAAAGGGTGGAGAATCCAAAAGGTTCGTTGTTGGATTGCATTACTTGAATGATCCTGCTTTCATGGTACTGTTGGATCAAGCTCAGGAAGAGTTTGGTTTCAGGCAAAAGGGAGCTCTTGCAATCCCTTGTCAGCCTCAAGAATTACAGAAGATTCTAGATGGCTGGAAAGCATAG
Predicted protein sequences of Glyma10g06402
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g06402.1 sequence type=predicted peptide gene model=Glyma10g06402 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYTCHLLQTEHIEFPKAQNSKAFKFTNSPYISRIKKIISTELKMLRSFVGKIEKGVSHFVHRRPPLNYLSEATTSVVPDDVREGYFAVLAIKGGESKRFVVGLHYLNDPAFMVLLDQAQEEFGFRQKGALAIPCQPQELQKILDGWKA*