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Report for Sequence Feature Glyma10g06402

Feature Type:gene_model
Chromosome:Gm10
Start:5129316
stop:5130129
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09870AT Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family | chr3:3027555-3027896 REVERSE LENGTH=113 SoyBaseE_val: 7.00E-25ISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02519PFAM Auxin responsive protein JGI ISS
UniRef100_B9S0H7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0H7_RICCO SoyBaseE_val: 5.00E-32ISS
UniRef100_UPI000233CC7CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CC7C related cluster n=1 Tax=unknown RepID=UPI000233CC7C SoyBaseE_val: 1.00E-71ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g06402 not represented in the dataset

Glyma10g06402 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g20630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g056300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g06402.1   sequence type=CDS   gene model=Glyma10g06402   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACTTGCCACTTGCTCCAAACCGAGCACATAGAGTTCCCAAAAGCTCAAAATTCAAAAGCTTTCAAGTTCACCAACTCACCCTATATATCAAGAATAAAAAAAATAATTAGCACTGAGTTAAAGATGCTTAGGTCTTTTGTTGGGAAGATAGAAAAGGGTGTTTCACACTTTGTACACAGAAGGCCTCCACTGAACTACTTGAGTGAAGCCACAACAAGTGTGGTGCCAGATGATGTTAGGGAAGGATATTTTGCTGTACTTGCAATAAAGGGTGGAGAATCCAAAAGGTTCGTTGTTGGATTGCATTACTTGAATGATCCTGCTTTCATGGTACTGTTGGATCAAGCTCAGGAAGAGTTTGGTTTCAGGCAAAAGGGAGCTCTTGCAATCCCTTGTCAGCCTCAAGAATTACAGAAGATTCTAGATGGCTGGAAAGCATAG

>Glyma10g06402.1   sequence type=predicted peptide   gene model=Glyma10g06402   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTCHLLQTEHIEFPKAQNSKAFKFTNSPYISRIKKIISTELKMLRSFVGKIEKGVSHFVHRRPPLNYLSEATTSVVPDDVREGYFAVLAIKGGESKRFVVGLHYLNDPAFMVLLDQAQEEFGFRQKGALAIPCQPQELQKILDGWKA*







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