SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03380 | AT | Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr5:832400-834301 REVERSE LENGTH=392 | SoyBase | E_val: 3.00E-67 | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG1603 | KOG | Copper chaperone | JGI | ISS | |
| PTHR22814 | Panther | COPPER TRANSPORT PROTEIN ATOX1-RELATED | JGI | ISS | |
| PTHR22814:SF13 | Panther | COPPER CHAPERONE-RELATED | JGI | ISS | |
| PF00403 | PFAM | Heavy-metal-associated domain | JGI | ISS | |
| UniRef100_I1L8Y0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8Y0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9ZRD8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GMFP5 (Fragment) n=1 Tax=Glycine max RepID=Q9ZRD8_SOYBN | SoyBase | E_val: 4.00E-100 | ISS |
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Glyma10g06250 not represented in the dataset |
Glyma10g06250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g20560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g055300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g06250.1 sequence type=CDS gene model=Glyma10g06250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAGGAAAAAGAGCAGCCTAAGAATGAAACCGAGAAGAAGCCCGAGGAGGCCGCCGCAGCCCCCAAGAAAGACGACGGACCCATCCCTGTCGTTTACAAACTCGACTTGCATTGCGAGGGATGCGTCAAGAAGATCAAACGCACATGTCGCCACTTCCAAGGTGTGGAAACCGTTAAGGCAGATCTATCGTCGAACAAAGTGACTGTTACCGGCAAATTGGATGCCGAGAAGCTGCGAGATAAGATCGCCGAGAGAACCAAGAAGAAGGTTGACATCATCTCAGCTCCGCCCAAAAAAGAAGCCGCCGCCACGGAAAATCCACCGGAGAAGAAGGTTGAAGAGAAGAAACCTGAAGAGAAAAAACCAGAAGAAAAACCTAAAGAGAGTATGGTGGTTTTGAAGATCAAACTGCACTGTGACGGTTGCATTGCGAAAATTCGAAGAATCATTATGAGGTTCAAAGGTGTACAATCGGTGAGCCTTGACGGAAGCAAGGACTTGGTGACAGTGAAGGGAACAATGGACGTGAAGGAGATGGTGTCGTACCTGAACGAGAAGCTGAAGCGAAACGTGGAAGTGGTGCCTCCTCCGAAGAAAGACGACGATAAGAAAGAGAAAGAAGGTGACGGTGGCGAAAAGAAAGAGAAAGAGAAAGACGGTGCCGGTGAGAAGAAAGAGAAAGACGTTGCTGCAGCGGCGGAGGTTATTAACAAAATGGAATATATGCACCAGATGGCACCTCCGTCGTTCTGGTACGACGGAGGACACTTTCCAGGTCAAACAAATTACGCTATGGAGGTTCACCCAGGATATGGTGCTAGTGCTAATAATCATTACGTGGAGCCAGGGTACGTGAACCAGGGTTATCCTCTGCAGCCACCTCTACCGTACTACATGCACCCGCACGCACCTCCGCCACAGATGTTCAGCGATGAGAACCCCAATGCTTGTTCCATCATGTGA
>Glyma10g06250.1 sequence type=predicted peptide gene model=Glyma10g06250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEEKEQPKNETEKKPEEAAAAPKKDDGPIPVVYKLDLHCEGCVKKIKRTCRHFQGVETVKADLSSNKVTVTGKLDAEKLRDKIAERTKKKVDIISAPPKKEAAATENPPEKKVEEKKPEEKKPEEKPKESMVVLKIKLHCDGCIAKIRRIIMRFKGVQSVSLDGSKDLVTVKGTMDVKEMVSYLNEKLKRNVEVVPPPKKDDDKKEKEGDGGEKKEKEKDGAGEKKEKDVAAAAEVINKMEYMHQMAPPSFWYDGGHFPGQTNYAMEVHPGYGASANNHYVEPGYVNQGYPLQPPLPYYMHPHAPPPQMFSDENPNACSIM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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