Glyma10g06200 - SoyBase

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Report for Sequence Feature Glyma10g06200

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4951901
stop:	4953099
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g06200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21090	AT	Annotation by Michelle Graham. TAIR10: Cupredoxin superfamily protein \| chr1:7384854-7386199 FORWARD LENGTH=242	SoyBase	E_val: 1.00E-39	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
UniRef100_C6T4W4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4W4_SOYBN	SoyBase	E_val: 3.00E-97	ISS
UniRef100_Q9LPU4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T22I11.8 n=1 Tax=Arabidopsis thaliana RepID=Q9LPU4_ARATH	SoyBase	E_val: 4.00E-37	ISS

Expression Patterns of Glyma10g06200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g06200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g054800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g06200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g06200

Limit To All Plant Sequences

>Glyma10g06200.2   sequence type=CDS   gene model=Glyma10g06200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTCCCATTTTCTTCTTTACTCTTCTACCTTTACTATTCCACTATTCTCGTTGCACCACCGTTATAGTTGATGGGTCTTCAGAATGGAAGAACCCCACAGTTCACATTGGAGATTCCATCACCTTTGATCTTTACAATTTCACACAAGCAACTCTTCTCACCAACCCCAACATTGCTTCCTACACGTGGCATCCATCACGACTTGGTTTCTTCTACTTTAGCTTCAATGATGGGTCCCTCAAAGCATGCCAAGCTTCTCAGAAGCTAGCAATTAAGGTCATCACTTCAGTAGCAACAACAACCACACCACATGCTTCAGCAATGCCTCCTGCTCCATTTTCTGATGAAGTGTCACCATCTCCTCTATTTCCATGGCATTACAATAATCCTCTGCATGCAGCTTCACCTGGTCCTTCACCTTCAACAAGTGTGACAGCTCCAATGGTGCCATATAAAAGTAGTTGCATGCCCTTTATTAGCAGTAACCCTGCAGTTCCTCTTCCCACTGATGAAGTTGACTCTGCTTCTTCTATACACCCTCTTCCCACCTCGTGGTCATGA

Predicted protein sequences of Glyma10g06200

Limit To All Plant Sequences

>Glyma10g06200.2   sequence type=predicted peptide   gene model=Glyma10g06200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFPIFFFTLLPLLFHYSRCTTVIVDGSSEWKNPTVHIGDSITFDLYNFTQATLLTNPNIASYTWHPSRLGFFYFSFNDGSLKACQASQKLAIKVITSVATTTTPHASAMPPAPFSDEVSPSPLFPWHYNNPLHAASPGPSPSTSVTAPMVPYKSSCMPFISSNPAVPLPTDEVDSASSIHPLPTSWS*

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