SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38160 | AT | Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein | chr4:17902412-17903413 FORWARD LENGTH=333 | SoyBase | E_val: 2.00E-157 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1267 | KOG | Mitochondrial transcription termination factor, mTERF | JGI | ISS | |
| PTHR13068 | Panther | CGI-12 PROTEIN-RELATED | JGI | ISS | |
| PF02536 | PFAM | mTERF | JGI | ISS | |
| UniRef100_C6TC57 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TC57_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SZL6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT4g38160/F20D10_280 n=1 Tax=Arabidopsis thaliana RepID=Q9SZL6_ARATH | SoyBase | E_val: 8.00E-155 | ISS |
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Glyma10g06160 not represented in the dataset |
Glyma10g06160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g20470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g054400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g06160.2 sequence type=CDS gene model=Glyma10g06160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATTAAGTGGAGAAACTATGACACGTGTCATAATCTGGAGCTGTACATTAATCCAACGGTCCAAATGTCAGCAAAGGAAGGAAGGCACACTCACTCACTGGTCATTTTATGTTTTTTCTCTCTACCCTCATTCATTCTCAGTCTCAATTTTGTTCAACACTCTCAGAGCCCTTTTCTGCTCCCACGCATATGCATACCGCACAACCACGATCACCTTTCGAGTAATATGGAGATCACGAGCAGCCATAACAGCGGCAGCATGATGTGGTTTTTCAAAGATAAGGGCTTTGATGACAACAGTGCACAAGGAATGTTCCGAAAGTGCCGGCGCCTCGAGGGTGTGCACCAAGAAAGAGCAAGTGAGAATTGGGACTATTTGAGAAGCATTGGCATTGAGGAAAGGAAGCTACCCTCAATTGTTTCAAAATGCCCCAAAATTCTTGCATTGGATCTTTATGAGAAGATTGTGCCCACTGTTGAGTGTCTCAGGACATTAGGAACAAAACCTAATGAGGTTGCTTCTGCCATAGCCAAATTTCCTCACATACTGTCGAACAGCGTGGAAGAGAAGCTTTGTCCCCTTTTGGCGTTCTTTCAGACTCTAGGTATCCCTGAAAAGCAAATTGGGAAAATGATACTGCTCAACCCTAGGCTTGTTAGCTACAGCATTGCAACGAAGCTGACGGAAATTGTGAACTTCCTTGCCAACCTTGGTCTCAATAAGGATGGAATGATCGGAAAAGTTATAGTCAGAGACCCATATATTATGGGTTATAGTGTCGATAAGAGGCTCCGCCCTACTTCGGAGTTTCTCAAGTCAATAGGGCTGAGTGAGGCAGATCTTCAGGCGGTGGCTGTGAACTTCCCGGCAATCTTGAGTAGAGATGTGAACAAGCTTTTGGTACCCAATTATGCATATCTAAAGAAACGTGGATTTGAAGACAGACAGATAGTTGCTTTGGTGGTTGGTTTTCCTCCTATCCTGATCAAGAGCATCCAAAATTCGTTAGAACCAAGAATCAAGTTTTTAGTAGATGTAATGGGGAGACAAGTTGACGAAGTCATTGATTATCCTTGCTTCTTTCGTCATGGTCTGAAGAGAAGAATAGAACCACGGTACAAACTTCTAAAGGAGAGGAGTTTAAATTGTAGCTTGAGTGAAATGTTGGATTGTAATAGGAAGAAGTTCTTCATGAAATTTGGCTTGTTAGAAGGGCATGCCTTGAGTAACTAG
>Glyma10g06160.2 sequence type=predicted peptide gene model=Glyma10g06160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEIKWRNYDTCHNLELYINPTVQMSAKEGRHTHSLVILCFFSLPSFILSLNFVQHSQSPFLLPRICIPHNHDHLSSNMEITSSHNSGSMMWFFKDKGFDDNSAQGMFRKCRRLEGVHQERASENWDYLRSIGIEERKLPSIVSKCPKILALDLYEKIVPTVECLRTLGTKPNEVASAIAKFPHILSNSVEEKLCPLLAFFQTLGIPEKQIGKMILLNPRLVSYSIATKLTEIVNFLANLGLNKDGMIGKVIVRDPYIMGYSVDKRLRPTSEFLKSIGLSEADLQAVAVNFPAILSRDVNKLLVPNYAYLKKRGFEDRQIVALVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGLKRRIEPRYKLLKERSLNCSLSEMLDCNRKKFFMKFGLLEGHALSN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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