Glyma10g06150 - SoyBase

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Report for Sequence Feature Glyma10g06150

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4920118
stop:	4922118
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g06150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66520	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:26551879-26553741 FORWARD LENGTH=620	SoyBase	E_val: 4.00E-70	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF47	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7LII9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7LII9_MEDTR	SoyBase	E_val: 8.00E-170	ISS
UniRef100_I1L8X0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8X0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g06150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g06150

Paralog	Evidence	Comments
Glyma13g20460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g06150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma10g06150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g06150

Limit To All Plant Sequences

>Glyma10g06150.1   sequence type=CDS   gene model=Glyma10g06150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAACCATTCACCAAGCCTTCCAAATCTACGCTCAAATGGTGGTCACAGGGCGCCACCACGACCCATTCCTCATGACATCACACATCTCCTTCTTCGCCACTCCCACCTTCCCTTCACCCAAATCCCCAACCCCGACCTCTTCCTCTTCAACCTCTTCATCAGAGCCTTCTCTCTCTCCCACTCACCCCACCACGCTCTCTCTCTCTCTCTACAAAAAAATGCTATCTTTTTCCCCACCCATCATCACCCATCACCCCTGACACCTTCCCCTTCCCCTTCCTCCTCAAGTCCTGCGCCTAGCTTTTGCTTCCAAAACTCGGCCATCAGTCCTGTGAGGGATTCTGTTTCTTATAACACGGTGATTAACGGGCTTGTGCGTAAGGGTCGTGCTGGTTGTTCTCTCAGGGTTATTACGGAGATGACACAGGTTTTTGTTGAGCCGGATGGGTATACGTTCGTCGCGTTTTTGTCTGCATGTTCCTCCTTCGAGGATCGGTTGATTGGGAAGGTGGTGCATGTGTTGGTGTATAGGAAATTGGATTGTTTAGGTGGGAATGTGTTGTTGGTGAATGTTGAGGTTGCTAGAAGGTTGTTTGATCAAATGGGGGGGAGAGATGTCGTTTCTTGGACTGCTATGATTAGTGGTTACTGTCATGCTGGGTGTTTTCAAGAAGCATTGGAATTGTTTGTGCAGTTGGAGGAATTGAGGATGGAACCTGACGAGGTCGTGGCAGTTGCTCCTCTTTCTGCGTGTGCATGGCTTGGTGCCCTTGAGTTGGGAAGAAGGATCCACCACAAGTATGATGGTGAGAGTTGGCAGTGTGGTTACCACAGAGGATTCGCTTGTGCTGTTGTGGATATGTATGCCAAGTGTGGAAGCATAGACACTGCTTTGGATGTGTTTGTCAACACAAGCGATGATATGAAAACTACTTTTCTCTATAACTCCATTGTGTCTGGCCTTGCTCATCATGGCCGTGAAATGAGGTTGCTAGGATTAAAGCCAGATGAGGTCACATTTGTAGCACTTTTATGTGCTTGTGGGCATAGTGGTTTGGTTGATGAAGGAAAGAGGCTGTTTGAGTCCATGTTGAGTGAGTATGGTGTTAATCATCAGATGGAGCATTATGGCTGTATGATTGACCTTCTTAGTAGGGCTGGTCATTTGAATGAAGCATATCGTTTGATTCAAAATATGCTGTTGAAGGCCAATGCTGTGATATGGAGAGCATTGTTGAGTGCTTGTAAGCTTCTTGCGGTGGAGCATGATCATGGAGTCCGTTATGTGATGCTATCTAATATGCCAGCTCTCATGGAAAAGAATGATGAAGCTGCAAGTGTGAGAAAGGCAATTGATAATGTTGTCATCCAGAAGCCTCTGGCTGGAGCTACGTGGAAATGA

Predicted protein sequences of Glyma10g06150

Limit To All Plant Sequences

>Glyma10g06150.1   sequence type=predicted peptide   gene model=Glyma10g06150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQNHSPSLPNLRSNGGHRAPPRPIPHDITHLLLRHSHLPFTQIPNPDLFLFNLFIRAFSLSHSPHHALSLSLQKNAIFFPTHHHPSPLTPSPSPSSSSPAPSFCFQNSAISPVRDSVSYNTVINGLVRKGRAGCSLRVITEMTQVFVEPDGYTFVAFLSACSSFEDRLIGKVVHVLVYRKLDCLGGNVLLVNVEVARRLFDQMGGRDVVSWTAMISGYCHAGCFQEALELFVQLEELRMEPDEVVAVAPLSACAWLGALELGRRIHHKYDGESWQCGYHRGFACAVVDMYAKCGSIDTALDVFVNTSDDMKTTFLYNSIVSGLAHHGREMRLLGLKPDEVTFVALLCACGHSGLVDEGKRLFESMLSEYGVNHQMEHYGCMIDLLSRAGHLNEAYRLIQNMLLKANAVIWRALLSACKLLAVEHDHGVRYVMLSNMPALMEKNDEAASVRKAIDNVVIQKPLAGATWK*

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