Glyma10g06130 - SoyBase

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Report for Sequence Feature Glyma10g06130

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4903108
stop:	4906109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g06130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03460	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:864391-865509 FORWARD LENGTH=89	SoyBase	E_val: 3.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1L8W7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8W7_SOYBN	SoyBase	E_val: 3.00E-51	ISS
UniRef100_Q5YJQ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F12E4.230-like protein (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q5YJQ6_HYAOR	SoyBase	E_val: 4.00E-19	ISS

Expression Patterns of Glyma10g06130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g06130

Paralog	Evidence	Comments
Glyma13g20431	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g06130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g054000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g06130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g06130

Limit To All Plant Sequences

>Glyma10g06130.2   sequence type=transcript   gene model=Glyma10g06130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCCAACACTAAATTCCAACATATATGTAATTTCGGCGTGGAAAGGAAATTACCAAATTGCCTCGCTTTCCCCAACGAACCTCGTTGTTGTGAATCGCGCTGCTGAATCAATCGTTCTCGGTTTTCGCGTACTCTACTCGTTCATCCCGACATGGTTTGCTTGGCTTGTTTGCTGCCCCTCTTTCTCGTCCCAATCGTCAACATCCTCCCTCTTCTCTTCCATTTTATCATGGGGAAAATCTATCGGGTTTTTGGTTGGGAGTACAGGAAACCGGAGAGGGCTCCTCCTGCATGTCCATTCAAGCCTCCAGCCAACAGGGCTGAGGCAGATGTTGAACCAGTTCCAGCAGATCCTGTTAAGCCTGGAAATGTAGATGTCAAGCAAGATTAATCTGGCGTACCTATTGTATAAGATTTGAGTTTGACAGGAGTAAAATGTATGATAACATCTGATGGTTTATGTATGTTTGTAACTTATATTAAATATCTTGTCTTGTCATGACCATTGTTTCAAAAAATAAAAAATAAAAAAGATGTTTGGTTGGTTTAAATTTGAAGTTGCT

Coding sequences of Glyma10g06130

Limit To All Plant Sequences

>Glyma10g06130.1   sequence type=CDS   gene model=Glyma10g06130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTGCTTGGCTTGTTTGCTGCCCCTCTTTCTCGTCCCAATCGTCAACATCCTCCCTCTTCTCTTCCATTTTATCATGGGGAAAATCTATCGGGTTTTTGGTTGGGAGTACAGGAAACCGGAGAGGGCTCCTCCTGCATGTCCATTCAAGCCTCCAGCCAACAGGGTTAGTGAAGCTGAGGCAGATGTTGAACCAGTTCCAGCAGATCCTGTTAAGCCTGGAAATGTAGATGTCAAGCAAGATTAA

>Glyma10g06130.2   sequence type=CDS   gene model=Glyma10g06130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTGCTTGGCTTGTTTGCTGCCCCTCTTTCTCGTCCCAATCGTCAACATCCTCCCTCTTCTCTTCCATTTTATCATGGGGAAAATCTATCGGGTTTTTGGTTGGGAGTACAGGAAACCGGAGAGGGCTCCTCCTGCATGTCCATTCAAGCCTCCAGCCAACAGGGCTGAGGCAGATGTTGAACCAGTTCCAGCAGATCCTGTTAAGCCTGGAAATGTAGATGTCAAGCAAGATTAA

Predicted protein sequences of Glyma10g06130

Limit To All Plant Sequences

>Glyma10g06130.1   sequence type=predicted peptide   gene model=Glyma10g06130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCLACLLPLFLVPIVNILPLLFHFIMGKIYRVFGWEYRKPERAPPACPFKPPANRVSEAEADVEPVPADPVKPGNVDVKQD*

>Glyma10g06130.2   sequence type=predicted peptide   gene model=Glyma10g06130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCLACLLPLFLVPIVNILPLLFHFIMGKIYRVFGWEYRKPERAPPACPFKPPANRAEADVEPVPADPVKPGNVDVKQD*

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