Glyma10g06000 - SoyBase

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Report for Sequence Feature Glyma10g06000

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4741164
stop:	4743467
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g06000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09780	AT	Annotation by Michelle Graham. TAIR10: CRINKLY4 related 1 \| chr3:3000838-3003165 REVERSE LENGTH=775	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF653	Panther		JGI		ISS
PF00020	PFAM	TNFR/NGFR cysteine-rich region	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9S0M2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0M2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L8V3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L8V3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g06000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g06000

Paralog	Evidence	Comments
Glyma13g20300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g06000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g052600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g06000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g06000

Limit To All Plant Sequences

>Glyma10g06000.1   sequence type=CDS   gene model=Glyma10g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAATTCTCACCGCCCTCTCTTTCTCTTCCTTCTTTCTTCTTCTCTTATTCCTTTTCCTATTCGGTAACGCACACGGGTTCGGCTCAATGGGACCAATCTCCGCGTCGTTCGGAAGAGACGAGGTTTTTTGCTCCATCGATGCTAGTGGAAAACAGGACGTTATTTGTTGGGGGAACAACGCCACGTCACCGTCGCTCTCCGCCGTCGCAAACGCCATCCCTGCTATGTCAGCACTCTCCGGCGGGGAGGGCTTTCTCTGCGGCATTTTAGCGAACACATCGCAAGCGTTTTGCTGGAGCGCTGTAACGAAACCGAGCGCAGATCTAATCCTCGTGCCTCCGGCGTACCGGAACACCGCTTATTCCCACATCGCCGCCGGCCAGAATCACGTATGCGCCGTCAAGGGATCCTACTTCGCCGATCGCGATTCCGGCACCGTTGACTGCTGGGAAATCACGAAAACCGCGAACAAAACTTTGACGGCGAAACAGAGCGATAAGTTCAACGACCAATTAATGTCGAATCTGGAGGTGAAGAGGGTTGTTTCCGGTGAAGGGTTCACCTGCGGCGAGGTAAACGACGGTGGACTAATCTGCTGGGGACCCACTTCGGAAAATTTGGGAAACATTAACATTTCCAATGTTACCGACAGTTTTGCGGTTCTGGTGGCTGGCCGGAGCGCCGTTTGCGGCGTTTTCAACGTTTCCGGCGAGTTAAAATGCTGGGGCGACCCGGTTTCGTATTCGGATCCTCCGTTGGATTCGGTTCGGTTAGTCTCTCTATCAGCAGGGGCTAACCATTTCTGTGGCGTGAGAATGGATAATCACGAAGTTGAATGCTGGGGTGATTTGAATTCCTCGGTTGTTCCAAAAGGTAATGGCTTTATGGCTATTGCTTCTTCGGATTTCACCACGTGCGGGATCAGGGAAGATGATCTTCTTCTGGATTGTTGGTTGGTCAACGCTTCAAAACCCGATTTTGATCCTCCTTTGGAGCTTTCAAGCCCTGGACTCTGCAGGGCTAGTGAGTGTGGGGTTGATGAGTTTGCTTTCAATGTTAGTGTTCTTAACGAGCTAGCTTTGACAAGCTTGTGTGTTAGAGAAGATTTGAGGATTTGTTCTCCTTGTGGGTCAAATTGTTCCAAAGGATACTTCTTGTCTAGTGAATGTACTAGGAATGCTGATAGAGTTTGCACTGCTTGTTCTCTTTGTCAGAACAGCTCTTGTTTTAATGTTTGTGGACTTCACTCTTCATCGGGGCTTCATTTGCATTGGCATTGGCATGATTTACGTAAATGGGTGGTGATAGTTGGGTGTCCAGTTTTGGGGTTTTTGGTTATTTTGCTTTGTGGGTGTCTTCTTATGGTTAGAAAGAGGTCTAAGAAGCAATCCAAGTCTTGCATGGGAAAACCGGATCAGGAGGATGATCATGTGAATGTTGCTCTTAACTCTACACCTTCGGTTAATTCTTGCCCCGGTGTGCCTCAGGTTTTCAGGCTTTCTGAGCTGAAGGATGCTACTAATGGGTTCAAGGAGTTTAATGAACTTGGGAGGGGGAGTTATGGGTTTGTGTATAAGGCTGCATTAGCTGATGGGAGAGTGGTTGCTGTTAAAAGAGCAAATGCTGCTACCATTATCCACACTAATAACCGTGATTTTGAAACGGAGCTGGAGATTCTATGCAAAATTCGCCACTGTAATGTTGTCAACTTGTTGGGGTATTGCGCGGAGATGGGGGAGAGGTTGCTTGTCTACGAGTATATGCCTCACGGGACGCTCTATGATCACCTCCACGGTGGTCTTTCTCCGCTGACTTGGAGCCTCAGGTTGAAGATTGCGATGCAGGCCGCAAAAGGACTTGAGTATCTTCACAAGGAACCTGTGCCTCCAATTGTGCACAACGATCTTAAAAGTTCCAACATTCTTTTGGATTCGGAGTGGGGGGCAAGGATTTCGGACTTTGGACTTCTTGCTTCGAGTGACAAGGATCTCAATGGGGACCTAGAAAGTGATGTTTACAATTTTGGGATTGTGTTGCTTGAGGTTCTGAGTGGAAGAAAGGCTTATGATAGGGATTACACCCCTTCCAACATGGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGGAAAGGTGCTGCTATAATTGATAGGTACGTGGCTCTTCCAAGAAATGTTGAACCTTTGCTAAAGCTTGCTGATATAGCAGAGCTTGCTGTGAGAGAGCGTCCAAGTGAGCGTCCACCTATGTCAGATATAGCATCTTGGTTGGAGCAAATTGTGAAGGACGGATTGATCTTATAG

Predicted protein sequences of Glyma10g06000

Limit To All Plant Sequences

>Glyma10g06000.1   sequence type=predicted peptide   gene model=Glyma10g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQILTALSFSSFFLLLLFLFLFGNAHGFGSMGPISASFGRDEVFCSIDASGKQDVICWGNNATSPSLSAVANAIPAMSALSGGEGFLCGILANTSQAFCWSAVTKPSADLILVPPAYRNTAYSHIAAGQNHVCAVKGSYFADRDSGTVDCWEITKTANKTLTAKQSDKFNDQLMSNLEVKRVVSGEGFTCGEVNDGGLICWGPTSENLGNINISNVTDSFAVLVAGRSAVCGVFNVSGELKCWGDPVSYSDPPLDSVRLVSLSAGANHFCGVRMDNHEVECWGDLNSSVVPKGNGFMAIASSDFTTCGIREDDLLLDCWLVNASKPDFDPPLELSSPGLCRASECGVDEFAFNVSVLNELALTSLCVREDLRICSPCGSNCSKGYFLSSECTRNADRVCTACSLCQNSSCFNVCGLHSSSGLHLHWHWHDLRKWVVIVGCPVLGFLVILLCGCLLMVRKRSKKQSKSCMGKPDQEDDHVNVALNSTPSVNSCPGVPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAALADGRVVAVKRANAATIIHTNNRDFETELEILCKIRHCNVVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLTWSLRLKIAMQAAKGLEYLHKEPVPPIVHNDLKSSNILLDSEWGARISDFGLLASSDKDLNGDLESDVYNFGIVLLEVLSGRKAYDRDYTPSNMVEWAVPLIKQGKGAAIIDRYVALPRNVEPLLKLADIAELAVRERPSERPPMSDIASWLEQIVKDGLIL*

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