Glyma10g05930 - SoyBase

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Report for Sequence Feature Glyma10g05930

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4651017
stop:	4655339
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09770	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:2996402-2997835 REVERSE LENGTH=388	SoyBase	E_val: 4.00E-129	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0080144	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid homeostasis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4265	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR22996	Panther	MAHOGUNIN	JGI		ISS
UniRef100_I1L8V1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8V1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HV40	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=2 Tax=Medicago truncatula RepID=Q2HV40_MEDTR	SoyBase	E_val: 3.00E-153	ISS

Expression Patterns of Glyma10g05930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05930

Paralog	Evidence	Comments
Glyma13g20270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g052000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05930

Limit To All Plant Sequences

>Glyma10g05930.1   sequence type=CDS   gene model=Glyma10g05930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAACATAGGAAGCAGCGGCTCCAACAGCCGCTGGAGACACGGCGGAGGCGGTGGCAGCGGGAGGCGGATTCACCCGCCGCCTCCGCCGGTGATGTCGCCGCCGGAGGTAACGGCGAACCGATTCGTGTACCCTCCGGCCGCCACGCCGTATCACAACTACCCCGGGTACTACCCGCCGCCGACCACCATGCCGGCGCCGTTGCCGGCGCCATACGACCACCACCACCGTCCGGCGGTGGACCCGATGTGGGTGAGGTATCCGCCGGCGGCACCGCCGGCACCGGCGCCGTACGTGGAGCACCAGAAGGCGGTTACGATTAAGAACGATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCTGTTTTCTCGTGTCGTTTACGTTTGATGCCACCGTTTCGGGAAGCATCACCATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCACCCTAACCCCAATGAAGGAAAATGTTCTTCCACCCGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCTGGAACCGGTATTGATTTTTCAACATTTGAGGAGTCTGAGTTATTGAAAGCAGGGGACATGGATGTCTATCCTGTTGCAATTAAAGCAGACGCATCCTCCGGCGACCATGATGAATCAAAATCAAATGAAACTCCTGCATCCGGTAGCTCAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCAGGTGAAGGTTGTTAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTTCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGGGAATGACCCGGGAAAAGAGTGTGTTATATGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGTTGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTCGAGAGGCTTTTGGAGATCAAAGTTGGACCCGAGCTTGAGGAGTGA

Predicted protein sequences of Glyma10g05930

Limit To All Plant Sequences

>Glyma10g05930.1   sequence type=predicted peptide   gene model=Glyma10g05930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNIGSSGSNSRWRHGGGGGSGRRIHPPPPPVMSPPEVTANRFVYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRPAVDPMWVRYPPAAPPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENPGCFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFKQPAGTGIDFSTFEESELLKAGDMDVYPVAIKADASSGDHDESKSNETPASGSSNSQITQAVFEKEKGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPELEE*

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