Glyma10g05880 - SoyBase

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Report for Sequence Feature Glyma10g05880

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4605964
stop:	4609449
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03150	AT	Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein \| chr5:745849-748678 FORWARD LENGTH=503	SoyBase	E_val: 1.00E-117	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0045604	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of epidermal cell differentiation	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0048589	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental growth	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0051302	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell division	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
KOG3576	KOG	Ovo and related transcription factors	JGI		ISS
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI		ISS
UniRef100_G7IBL8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7IBL8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CB07	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CB07 related cluster n=1 Tax=unknown RepID=UPI000233CB07	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05880

Paralog	Evidence	Comments
Glyma13g20231	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g051500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05880

Limit To All Plant Sequences

>Glyma10g05880.1   sequence type=CDS   gene model=Glyma10g05880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAATGATGCCCGCTGACCCCTTTTCCTTATCCACTTCCATCGGAGGCTTCACTCAAGATCAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCTCCCAAGAAGAAGAGAAACCTTCCGGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTATCCCCGAAGACCCTCATGGCCACAAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCATCGAAGGGGTCACAACCTTCCGTGGAAGCTAAGACAAAGGTCCAACAAAGAGGTGAGAAAGAAGGTTTATATCTGCCCTGAACAAACCTGCGTCCACCACGACCCTGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCATTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCTCACACCAAAACCTGTGGAACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGATAGCTTCATTACTCATAGAGCGTTTTGCGATGCATTGGCTGAAGAGAGTGCGAGGCTCACAGCAGTTACAACAACAACTCTAAATTTCAAGAGTGAAGAGGGTGCTAATAATGTGATGAACTCGCAGCAGCATGGTTTGGGAGGACATGGACTAATTGGAGCACAACAAAGTCTTCAAAATGTTTCTGGCATTCCAAAATTCGGACCACATAGTTTTCGTTTGGATTTCAATGGAATGGAACAACAACAAAGGCCAAGTTTGTCACTATGGTTGAACCAGGGGAATCCCCAGATGAATCATAATAATAATAACATTAATAGCAGCAATAGTACTTCCAATGTGGGACCCAATTACATGTCAGCATGCTCTTCTTCAGGTTTGCCTGAGATTGTGCAAATGGCTCAGGCTAATGCTATGATGGGTTCTTCATCGATGGTGTCCAATTTTGGAGTTCATCATGCGGGTTCTAATAATTCAAGCAGTGCAAATCTTTCACTAGGGAAAAGAGGGGAAGCAGGTGGAAGTACTGTAGTGGACATGGCTTCTATTTATAACAACTCTGAGGGTCAAAACAAGAATTCAAAGCCTGCTTCACCTATGTCAGCAACTGCGCTTCTTCAGAAAGCAGCGCAAATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGAGTGATTAACTCACCTTCCTCCCAAACTACCAGTCTCAATAATAACAACAACAATGGTGATGCAGCCATGATGCTGGGAAGTAACACTACTACTACTACTACTGTTGCTGCAAATGCAAATGATCACTTTAGCTCATTGACGCATTCATCAAACAGTTTTGACCAACTTGTGATGCAAGTCAATGGGCAGTTGCAAAGTGAGCCAGTGAAGTTGAAGCTTCATTCTAATGCTGTGGAGAACAATTTGACAAGGGATTTTCTCGGTGTGAGTGGTGGAGGAGGTGGTGGTGGACCTCAGTACCTTTCCCAAGAGCTTGCAAAGTTTGCTTCCATAAATTCACCAATGGGGTTGATCCAATTCACTAGCAACCAATGA

Predicted protein sequences of Glyma10g05880

Limit To All Plant Sequences

>Glyma10g05880.1   sequence type=predicted peptide   gene model=Glyma10g05880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQMMPADPFSLSTSIGGFTQDQQNTNPNPKPNAPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTAVTTTTLNFKSEEGANNVMNSQQHGLGGHGLIGAQQSLQNVSGIPKFGPHSFRLDFNGMEQQQRPSLSLWLNQGNPQMNHNNNNINSSNSTSNVGPNYMSACSSSGLPEIVQMAQANAMMGSSSMVSNFGVHHAGSNNSSSANLSLGKRGEAGGSTVVDMASIYNNSEGQNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVINSPSSQTTSLNNNNNNGDAAMMLGSNTTTTTTVAANANDHFSSLTHSSNSFDQLVMQVNGQLQSEPVKLKLHSNAVENNLTRDFLGVSGGGGGGGPQYLSQELAKFASINSPMGLIQFTSNQ*

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