Glyma10g05830 - SoyBase

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Report for Sequence Feature Glyma10g05830

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4559665
stop:	4561217
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03240	AT	Annotation by Michelle Graham. TAIR10: polyubiquitin 3 \| chr5:771976-772896 REVERSE LENGTH=306	SoyBase	E_val: 0	ISS
GO:0006464	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein modification process	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
KOG0005	KOG	Ubiquitin-like protein	JGI		ISS
PTHR10666	Panther	UBIQUITIN	JGI		ISS
PF00240	PFAM	Ubiquitin family	JGI		ISS
UniRef100_A1X1E5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyubiquitin n=1 Tax=Noccaea caerulescens RepID=A1X1E5_THLCA	SoyBase	E_val: 0	ISS
UniRef100_I1L8T7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8T7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05830

Paralog	Evidence	Comments
Glyma13g20197	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g051100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05830

Limit To All Plant Sequences

>Glyma10g05830.1   sequence type=CDS   gene model=Glyma10g05830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACGATCACCTTGGAGGTGGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAAATCCAAGACAAGGAGGGCATTCCTCCGGATCAACAGCGTTTAATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGACTACAACATCCAAAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGCGGCATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATCACGCTAGAGGTGGAGTCCTCCGACACAATCGATAACGTGAAAGCCAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCAGCAACGTTTGATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACCCTCGCCGATTACAATATCCAGAAAGAATCGACTCTGCATTTGGTGCTTCGTCTCCGCGGAGGGATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATTACGCTAGAGGTAGAGTCCTCTGACACAATCGATAACGTGAAAGCGAAGATCCAGGATAAGGAAGGTATTCCACCGGATCAGCAACGTCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGAACCCTCGCCGATTACAATATTCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGCGGAGGGATGCAGATCTTCGTGAAGACGCTCACCGGAAAAACGATTACTCTGGAGGTGGAGAGTTCTGATACGATCGATAACGTGAAGGCAAAGATTCAGGATAAGGAGGGGATTCCACCGGATCAGCAGCGTCTTATCTTCGCAGGGAAGCAGCTTGAGGATGGACGCACGCTTGCAGATTATAATATTCAGAAGGAGTCCACGCTTCACCTTGTCCTCAGGCTCCGTGGTGGTGATTTCTAG

Predicted protein sequences of Glyma10g05830

Limit To All Plant Sequences

>Glyma10g05830.1   sequence type=predicted peptide   gene model=Glyma10g05830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF*

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