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Report for Sequence Feature Glyma10g05780

Feature Type:gene_model
Chromosome:Gm10
Start:4521095
stop:4523496
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03120AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:734062-734683 FORWARD LENGTH=76 SoyBaseE_val: 6.00E-12ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LZ24UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZ24_SOYBN SoyBaseE_val: 5.00E-41ISS
UniRef100_Q9FYN1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 n=1 Tax=Arabidopsis thaliana RepID=Q9FYN1_ARATH SoyBaseE_val: 2.00E-09ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g05780 not represented in the dataset

Glyma10g05780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g20140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g050600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g05780.1   sequence type=CDS   gene model=Glyma10g05780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCACATATGGAGCTTAGGTCTACCTTCACCACCTGCTTCTTTCTCTTGATTCTCATCCTGGCTCTCCCTCGTTTCTCAAGAGGGGAATCTGAAGCATTGCATACAGAGATATATGAGATTGATTATAGAGGTCCAGAGACACACTCTTCAGGTGTTCCTCCTCCTCATCACTTCCATATTGGTAAGCAGCATTCAACTTCTCATCCTCAAAAAGGCTCAGTCAGAGGAACCAAAGCTTTGGGCTTAAGGGATAGCACTTACGATGAAAATAAGGTCAAGAAAGTACATGAATGA

>Glyma10g05780.1   sequence type=predicted peptide   gene model=Glyma10g05780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPHMELRSTFTTCFFLLILILALPRFSRGESEALHTEIYEIDYRGPETHSSGVPPPHHFHIGKQHSTSHPQKGSVRGTKALGLRDSTYDENKVKKVHE*







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