Glyma10g05761 - SoyBase

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Report for Sequence Feature Glyma10g05761

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4504393
stop:	4508218
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05761

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09730	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 1171 Blast hits to 1097 proteins in 212 species: Archae - 14; Bacteria - 83; Metazoa - 583; Fungi - 105; Plants - 149; Viruses - 14; Other Eukaryotes - 223 (source: NCBI BLink). \| chr3:2984018-2986260 FORWARD LENGTH=397	SoyBase	E_val: 8.00E-47	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_UPI000233CD70	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CD70 related cluster n=1 Tax=unknown RepID=UPI000233CD70	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05761

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g05761 not represented in the dataset	Glyma10g05761 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05761

Paralog	Evidence	Comments
Glyma13g20113	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05761 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g050400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05761

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g05761

Limit To All Plant Sequences

>Glyma10g05761.2   sequence type=transcript   gene model=Glyma10g05761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCACTTGCAATTTGCAAACTGTGTAATTGTTTGTTTGTCACAGAAATAACAGTGAAGAAGAAACTCTCAGTTGAAAAATTCAACCGCGCTTAGATTTCGTTTTTTCTGAATGTGGCCCATTCTCTTACTCGTTGCCGTGGCCGGATCCACTGGTTTCGCCACCAAACGCTTCCTTACTCGCAGAAACACCATTGAAGGTGAAAACGTCAATCTCCACGATCCAAGTGCTTTTGACTTTTCCAGTTCGGAAAGCACTTCTCAGATGCATAACAATGATGGAGTGTTCACGTTTTCCAGTTCAAAATCTGAATCTCTGACACAACAAGATGGACCTGAGAGTAGACGATCCCGAGCTTCAAATGACGGAGTTAGGGCTCCGAAGGTTGAGGCGCGATCGGAGAAGCGGAACGGTGGAACTAAACTACATTTTCGTATGAAGAAGAGGGAGATTACAAGGAATGTCGCTGCAAAGGCTCCGGTCCGTTCTTCTAAAGATGACTCCTTATTTGGTCGGGGACTTTGCTCTGGCATCATGTGTATGATGTCTGCTGGAAAAGCTGAGATCAATAAGCTGAACAAGACCATGGACGAGACAGCTAAACTTGTTCAGGAACTGAAATCTGAGCTCAACAGAAGAAAATCGTCACATGCTCTTCAAAATTTGGATTCTGTTGGCAATGGTGTTACGAACTCTTGCAAAATCAGTGGCAGGAACGAAGTGATGCTCAAGAAGACAAACAGTGAGCTCAGAGATGTTGATGTCAAAATTTGGAGTCCTTGTGTAAATGATTGTGGTGAATGTGGAAGCAGTGCTCTTACTGAAGAACCAGAACCACAGGTTCTGGAAATGGATCAACTGGAAGCAGAACTTGAGTTTGAACTCCAAAAGCTTTCTGGGTGTGCTACTGACGGCCCTTGCGATGAAAAAATAAAGCCTAACTTAGATGAGCTTGAAGCTCCAGGTGAAGGCTATCATGGAACAGATCATGGAGTATCAGCATCTGAATTGCATCAGAAACTAAGCCACTTGCTAATAAAACAGCAAGAAAATCAGATCATGGAGCTAGAATCTGAACTGCACCAAGCTCAGTCAAATCTGCATGAGAAGGAGGCTGAACTTCAGGCACTAAAGGACTGTGTCAAACGCCTTACTGAACTCTCGTTATCCACAGTTTCAGATGATGAAGCTCAGGTTCTCTCTGATCCAAAGGGAACAAGCGATTATGGCAACAATAACATGCACTCTGAATCAAAACATTCAGTTATTGGGACGAAAAGACCTCTTGATTCTGAATCTTTCTCGTGTTACATGTGAAACGACACTTATCTCTGTGGGGATACAACCATACAAGGTATATAGACAACTTTATCTGCATTCGGATAAAAGTGTAAATTACTGTAGTTGACAACTCCCTTCCATATTATAACCTAATTATTATGCCTTATGTTGTATATGTATAAATTATTTAGGCAGATATAATTATAAAATTTAGCAACTCAGTACTCGGATACCGATATGTTCCATAACATGAAGTTCTACCATATTCATTTTTAATACATTATAACTTGCAGAGCAGGTCATGTTACTAATGTTAGTACTCTAGTATTAACTATGAGCATGCCAATTTTTTATTATATAAATACTATATAGTAACAGATCTGATTATTTGATATTTTGTCGTCTACTTTTTGGAGCTGAACTGATACTGATTCTAGAGTGAGTTG

Coding sequences of Glyma10g05761

Limit To All Plant Sequences

>Glyma10g05761.1   sequence type=CDS   gene model=Glyma10g05761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCCCATTCTCTTACTCGTTGCCGTGGCCGGATCCACTGGTTTCGCCACCAAACGCTTCCTTACTCGCAGAAACACCATTGAAGGTGAAAACGTCAATCTCCACGATCCAAGTGCTTTTGACTTTTCCAGTTCGGAAAGCACTTCTCAGATGCATAACAATGATGGAGTGTTCACGTTTTCCAGTTCAAAATCTGAATCTCTGACACAACAAGATGGACCTGAGAGTAGACGATCCCGAGCTTCAAATGACGGAGTTAGGGCTCCGAAGGTTGAGGCGCGATCGGAGAAGCGGAACGGTGGAACTAAACTACATTTTCGTATGAAGAAGAGGGAGATTACAAGGAATGTCGCTGCAAAGGCTCCGGTCCGTTCTTCTAAAGATGACTCCTTATTTGGTCGGGGACTTTGCTCTGGCATCATGTGTATGATGTCTGCTGGAAAAGCTGAGATCAATAAGCTGAACAAGACCATGGACGAGACAGCTAAACTTGTTCAGGAACTGAAATCTGAGCTCAACAGAAGAAAATCGTCACATGCTCTTCAAAATTTGGATTCTGTTGGCAATGGTGTTACGAACTCTTGCAAAATCAGTGGCAGGAACGAAGTGATGCTCAAGAAGACAAACAGTGAGCTCAGAGATGTTGATGTCAAAATTTGGAGTCCTTGTGTAAATGATTGTGGTGAATGTGGAAGCAGTGCTCTTACTGAAGAACCAGAACCACAGGTTCTGGAAATGGATCAACTGGAAGCAGAACTTGAGTTTGAACTCCAAAAGCTTTCTGGGTGTGCTACTGACGGCCCTTGCGATGAAAAAATAAAGCCTAACTTAGATGAGCTTGAAGCTCCAGGTGAAGGCTATCATGGAACAGATCATGGAGTATCAGCATCTGAATTGCATCAGAAACTAAGCCACTTGCTAATAAAACAGCAAGAAAATCAGATCATGGAGCTAGAATCTGAACTGCACCAAGCTCAGTCAAATCTGCATGAGAAGGAGGCTGAACTTCAGGCACTAAAGGACTGTGTCAAACGCCTTACTGAACTCTCGTTATCCACAGTTTCAGATGATGAAGCTCAGGTTCTCTCTGATCCAAAGGGAACAAGCGATTATGGCAACAATAACATGCACTCTGAATCAAAACATTCAGTTATTGGGACGAAAAGACCTCTTGATTCTGAATCTTTCTCGTGTTACATGTGA

>Glyma10g05761.2   sequence type=CDS   gene model=Glyma10g05761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCCCATTCTCTTACTCGTTGCCGTGGCCGGATCCACTGGTTTCGCCACCAAACGCTTCCTTACTCGCAGAAACACCATTGAAGGTGAAAACGTCAATCTCCACGATCCAAGTGCTTTTGACTTTTCCAGTTCGGAAAGCACTTCTCAGATGCATAACAATGATGGAGTGTTCACGTTTTCCAGTTCAAAATCTGAATCTCTGACACAACAAGATGGACCTGAGAGTAGACGATCCCGAGCTTCAAATGACGGAGTTAGGGCTCCGAAGGTTGAGGCGCGATCGGAGAAGCGGAACGGTGGAACTAAACTACATTTTCGTATGAAGAAGAGGGAGATTACAAGGAATGTCGCTGCAAAGGCTCCGGTCCGTTCTTCTAAAGATGACTCCTTATTTGGTCGGGGACTTTGCTCTGGCATCATGTGTATGATGTCTGCTGGAAAAGCTGAGATCAATAAGCTGAACAAGACCATGGACGAGACAGCTAAACTTGTTCAGGAACTGAAATCTGAGCTCAACAGAAGAAAATCGTCACATGCTCTTCAAAATTTGGATTCTGTTGGCAATGGTGTTACGAACTCTTGCAAAATCAGTGGCAGGAACGAAGTGATGCTCAAGAAGACAAACAGTGAGCTCAGAGATGTTGATGTCAAAATTTGGAGTCCTTGTGTAAATGATTGTGGTGAATGTGGAAGCAGTGCTCTTACTGAAGAACCAGAACCACAGGTTCTGGAAATGGATCAACTGGAAGCAGAACTTGAGTTTGAACTCCAAAAGCTTTCTGGGTGTGCTACTGACGGCCCTTGCGATGAAAAAATAAAGCCTAACTTAGATGAGCTTGAAGCTCCAGGTGAAGGCTATCATGGAACAGATCATGGAGTATCAGCATCTGAATTGCATCAGAAACTAAGCCACTTGCTAATAAAACAGCAAGAAAATCAGATCATGGAGCTAGAATCTGAACTGCACCAAGCTCAGTCAAATCTGCATGAGAAGGAGGCTGAACTTCAGGCACTAAAGGACTGTGTCAAACGCCTTACTGAACTCTCGTTATCCACAGTTTCAGATGATGAAGCTCAGGTTCTCTCTGATCCAAAGGGAACAAGCGATTATGGCAACAATAACATGCACTCTGAATCAAAACATTCAGTTATTGGGACGAAAAGACCTCTTGATTCTGAATCTTTCTCGTGTTACATGTGA

Predicted protein sequences of Glyma10g05761

Limit To All Plant Sequences

>Glyma10g05761.1   sequence type=predicted peptide   gene model=Glyma10g05761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWPILLLVAVAGSTGFATKRFLTRRNTIEGENVNLHDPSAFDFSSSESTSQMHNNDGVFTFSSSKSESLTQQDGPESRRSRASNDGVRAPKVEARSEKRNGGTKLHFRMKKREITRNVAAKAPVRSSKDDSLFGRGLCSGIMCMMSAGKAEINKLNKTMDETAKLVQELKSELNRRKSSHALQNLDSVGNGVTNSCKISGRNEVMLKKTNSELRDVDVKIWSPCVNDCGECGSSALTEEPEPQVLEMDQLEAELEFELQKLSGCATDGPCDEKIKPNLDELEAPGEGYHGTDHGVSASELHQKLSHLLIKQQENQIMELESELHQAQSNLHEKEAELQALKDCVKRLTELSLSTVSDDEAQVLSDPKGTSDYGNNNMHSESKHSVIGTKRPLDSESFSCYM*

>Glyma10g05761.2   sequence type=predicted peptide   gene model=Glyma10g05761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWPILLLVAVAGSTGFATKRFLTRRNTIEGENVNLHDPSAFDFSSSESTSQMHNNDGVFTFSSSKSESLTQQDGPESRRSRASNDGVRAPKVEARSEKRNGGTKLHFRMKKREITRNVAAKAPVRSSKDDSLFGRGLCSGIMCMMSAGKAEINKLNKTMDETAKLVQELKSELNRRKSSHALQNLDSVGNGVTNSCKISGRNEVMLKKTNSELRDVDVKIWSPCVNDCGECGSSALTEEPEPQVLEMDQLEAELEFELQKLSGCATDGPCDEKIKPNLDELEAPGEGYHGTDHGVSASELHQKLSHLLIKQQENQIMELESELHQAQSNLHEKEAELQALKDCVKRLTELSLSTVSDDEAQVLSDPKGTSDYGNNNMHSESKHSVIGTKRPLDSESFSCYM*

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