Glyma10g05750 - SoyBase

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Report for Sequence Feature Glyma10g05750

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4494214
stop:	4501577
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03080	AT	Annotation by Michelle Graham. TAIR10: Phosphatidic acid phosphatase (PAP2) family protein \| chr5:721976-722656 FORWARD LENGTH=226	SoyBase	E_val: 2.00E-119	ISS
GO:0006464	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein modification process	SoyBase	N/A	ISS
GO:0006651	GO-bp	Annotation by Michelle Graham. GO Biological Process: diacylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008195	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidate phosphatase activity	SoyBase	N/A	ISS
GO:0008474	GO-mf	Annotation by Michelle Graham. GO Molecular Function: palmitoyl-(protein) hydrolase activity	SoyBase	N/A	ISS
KOG3146	KOG	Dolichyl pyrophosphate phosphatase and related acid phosphatases	JGI		ISS
PTHR11247	Panther	PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1	JGI		ISS
PTHR11247:SF14	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01569	PFAM	PAP2 superfamily	JGI		ISS
UniRef100_B9SGQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dolichyldiphosphatase, putative n=1 Tax=Ricinus communis RepID=B9SGQ3_RICCO	SoyBase	E_val: 8.00E-108	ISS
UniRef100_I1L8T1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8T1_SOYBN	SoyBase	E_val: 1.00E-164	ISS

Expression Patterns of Glyma10g05750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05750

Paralog	Evidence	Comments
Glyma13g20100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g050300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g05750

Limit To All Plant Sequences

>Glyma10g05750.2   sequence type=transcript   gene model=Glyma10g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAGTAACGTTTATTCAATTTTTTGAGGCCATGAAAAATCTGAGTAATCAATGAGGCGAGATGTAACGTAGTAACGGGGAAAGAAAGAGCCATTCTCCGTTGTCACTTTTCACTATCACCCACTCCAAACCCTTCGTCGATCTCAGATCTTCCACAATGACAACTCCGACGCCGCTGAAGGCCGTGACGCTAACCCACGTGCGCTACCAAAGAGGCGACGGCGTGGGCCATTTCCTGGCCTGGATATCCCTCGTCCCCGTCTTCATCTCTCTGGGTGGCTTCGTCTCGCACTTCATCTTCCGCCGCGAGCTCCAAGGCATCTTCTTCGCCCTCGGCCTTATCGTCTCCCAATTCATCAACGAAGTCATCAAAACCTCCGTCCAGCAAGCCCGCCCCGCCACCTGCGCGCTCCTCGAGATGTGCGACTCTCACGGCTGGCCCTCCAGTCACTGCCAGTACATGTTCTTCTTCGCCACCTATCTCACCCTCCTCTCCCTCAGGGGCCTCTCCTTCTGGCACGTGCGCGATAATCCCCTCCTCCACGCCCTCACGTGGTCCCTCGCGGTTCTCACTATGTATTCTCGGGTTTACTTGGGCTACCATACGGTTGCGCAGGTGTTCGCCGGAACCGCGCTTGGGGTTTTTCTCGGCGCGGTTTGGTTTTGGGTTGTGAACTCCGTTTTGCATCCGTACTTTCCGATTATTGAAGAGAGCGCGTTTGGGAGGTGGTTTTACGTGAAGGACACTTCTCATATACCTAATGTGTTGAAGTTTGAGTATGATATGGCCAGGGCTGAGAGACGGAAGGTGGCGTTGAATTCTAAGTCGGATTGATTGGCACATTGCTTCGAATTTTTCTTCTAGGATTTGTATTCACAAGTATTTATGGCAGTATTACTATAGCTTTATTTTGTGGAGCTTTCCACTATAGAAGCCAACTGGCTGAGCCACTCAGGTATAAATGGCATCTATGAAGAGAGCAGCAGAGCACACTGACATGGTACTACGGACCTATGATGCCTGTGAAATAGAACTGATGTATGAATAGATGGCTACCTGATGTTATAGATAGACATGAATATTTTATCTTGTTTTCTTACATGGGTTTTAGACAACATACATTGACACAAATACAACCAAGGGATTGTTCAAATCATTGATAAATTTATAAATTTATAAATTTCTGGTTTGCACCTAAAATATATTGTGCAAGCTCTATATTGTGTTTTA

>Glyma10g05750.3   sequence type=transcript   gene model=Glyma10g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCACATTGCTCCGAATTTTTCTTCTAGGGTTTGTATTCACAAGTATTTATGGCAGTATTACTATAGCTTTATTTTGTGGAGCTTTCCACTATAGAAGCCAACTGGCTGAGCCACTCAGGTATAAATGGCATCTATGAAGAGAGCAGCAGAGCACACTGACATGGCCATGAAAAATCTGAGTAATCAATGAGGCGAGATGTAACGTAGTAACGGGGAAAGAAAGAGCCATTCTCCGTTGTCACTTTTCACTATCACCCACTCCAAACCCTTCGTCGATCTCAGATCTTCCACAATGACAACTCCGACGCCGCTGAAGGCCGTGACGCTAACCCACGTGCGCTACCAAAGAGGCGACGGCGTGGGCCATTTCCTGGCCTGGATATCCCTCGTCCCCGTCTTCATCTCTCTGGGTGGCTTCGTCTCGCACTTCATCTTCCGCCGCGAGCTCCAAGGCATCTTCTTCGCCCTCGGCCTTATCGTCTCCCAATTCATCAACGAAGTCATCAAAACCTCCGTCCAGCAAGCCCGCCCCGCCACCTGCGCGCTCCTCGAGATGTGCGACTCTCACGGCTGGCCCTCCAGTCACTGCCAGTACATGTTCTTCTTCGCCACCTATCTCACCCTCCTCTCCCTCAGGGGCCTCTCCTTCTGGCACGTGCGCGATAATCCCCTCCTCCACGCCCTCACGTGGTCCCTCGCGGTTCTCACTATGTATTCTCGGGTTTACTTGGGCTACCATACGGTTGCGCAGGTGTTCGCCGGAACCGCGCTTGGGGTTTTTCTCGGCGCGGTTTGGTTTTGGGTTGTGAACTCCGTTTTGCATCCGTACTTTCCGATTATTGAAGAGAGCGCGTTTGGGAGGTGGTTTTACGTGAAGGACACTTCTCATATACCTAATGTGTTGAAGTTTGAGTATGATATGGCCAGGGCTGAGAGACGGAAGGTGGCGTTGAATTCTAAGTCGGATTGATTGGCACATTGCTTCGAATTTTTCTTCTAGGATTTGTATTCACAAGTATTTATGGCAGTATTACTATAGCTTTATTTTGTGGAGCTTTCCACTATAGAAGCCAACTGGCTGAGCCACTCAGGTATAAATGGCATCTATGAAGAGAGCAGCAGAGCACACTGACATGGTACTACGGACCTATGATGCCTGTGAAATAGAACTGATGTATGAATAGATGGCTACCTGATGTTATAGATAGACATGAATATTTTATCTTGTTTTCTTACATGGGTTTTAGACAACATACATTGACACAAATACAACCAAGGGATTGTTCAAATCATTGATAAATTTATAAATTTATAAATTTCTGGTTTGCACCTAAAATATATTGTGCAAGCTCTA

Coding sequences of Glyma10g05750

Limit To All Plant Sequences

>Glyma10g05750.1   sequence type=CDS   gene model=Glyma10g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACTCCGACGCCGCTGAAGGCCGTGACGCTAACCCACGTGCGCTACCAAAGAGGCGACGGCGTGGGCCATTTCCTGGCCTGGATATCCCTCGTCCCCGTCTTCATCTCTCTGGGTGGCTTCGTCTCGCACTTCATCTTCCGCCGCGAGCTCCAAGGCATCTTCTTCGCCCTCGGCCTTATCGTCTCCCAATTCATCAACGAAGTCATCAAAACCTCCGTCCAGCAAGCCCGCCCCGCCACCTGCGCGCTCCTCGAGATGTGCGACTCTCACGGCTGGCCCTCCAGTCACTGCCAGTACATGTTCTTCTTCGCCACCTATCTCACCCTCCTCTCCCTCAGGGGCCTCTCCTTCTGGCACGTGCGCGATAATCCCCTCCTCCACGCCCTCACGTGGTCCCTCGCGGTTCTCACTATGTATTCTCGGGTTTACTTGGGCTACCATACGGTTGCGCAGGTGTTCGCCGGAACCGCGCTTGGGGTTTTTCTCGGCGCGGTTTGGTTTTGGGTTGTGAACTCCGTTTTGCATCCGTACTTTCCGATTATTGAAGAGAGCGCGTTTGGGAGGTGGTTTTACGTGAAGGACACTTCTCATATACCTAATGTGTTGAAGTTTGAGTATGATATGGCCAGGGCTGAGAGACGGAAGGTGGCGTTGAATTCTAAGTCGGATTGA

>Glyma10g05750.2   sequence type=CDS   gene model=Glyma10g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACTCCGACGCCGCTGAAGGCCGTGACGCTAACCCACGTGCGCTACCAAAGAGGCGACGGCGTGGGCCATTTCCTGGCCTGGATATCCCTCGTCCCCGTCTTCATCTCTCTGGGTGGCTTCGTCTCGCACTTCATCTTCCGCCGCGAGCTCCAAGGCATCTTCTTCGCCCTCGGCCTTATCGTCTCCCAATTCATCAACGAAGTCATCAAAACCTCCGTCCAGCAAGCCCGCCCCGCCACCTGCGCGCTCCTCGAGATGTGCGACTCTCACGGCTGGCCCTCCAGTCACTGCCAGTACATGTTCTTCTTCGCCACCTATCTCACCCTCCTCTCCCTCAGGGGCCTCTCCTTCTGGCACGTGCGCGATAATCCCCTCCTCCACGCCCTCACGTGGTCCCTCGCGGTTCTCACTATGTATTCTCGGGTTTACTTGGGCTACCATACGGTTGCGCAGGTGTTCGCCGGAACCGCGCTTGGGGTTTTTCTCGGCGCGGTTTGGTTTTGGGTTGTGAACTCCGTTTTGCATCCGTACTTTCCGATTATTGAAGAGAGCGCGTTTGGGAGGTGGTTTTACGTGAAGGACACTTCTCATATACCTAATGTGTTGAAGTTTGAGTATGATATGGCCAGGGCTGAGAGACGGAAGGTGGCGTTGAATTCTAAGTCGGATTGA

>Glyma10g05750.3   sequence type=CDS   gene model=Glyma10g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACTCCGACGCCGCTGAAGGCCGTGACGCTAACCCACGTGCGCTACCAAAGAGGCGACGGCGTGGGCCATTTCCTGGCCTGGATATCCCTCGTCCCCGTCTTCATCTCTCTGGGTGGCTTCGTCTCGCACTTCATCTTCCGCCGCGAGCTCCAAGGCATCTTCTTCGCCCTCGGCCTTATCGTCTCCCAATTCATCAACGAAGTCATCAAAACCTCCGTCCAGCAAGCCCGCCCCGCCACCTGCGCGCTCCTCGAGATGTGCGACTCTCACGGCTGGCCCTCCAGTCACTGCCAGTACATGTTCTTCTTCGCCACCTATCTCACCCTCCTCTCCCTCAGGGGCCTCTCCTTCTGGCACGTGCGCGATAATCCCCTCCTCCACGCCCTCACGTGGTCCCTCGCGGTTCTCACTATGTATTCTCGGGTTTACTTGGGCTACCATACGGTTGCGCAGGTGTTCGCCGGAACCGCGCTTGGGGTTTTTCTCGGCGCGGTTTGGTTTTGGGTTGTGAACTCCGTTTTGCATCCGTACTTTCCGATTATTGAAGAGAGCGCGTTTGGGAGGTGGTTTTACGTGAAGGACACTTCTCATATACCTAATGTGTTGAAGTTTGAGTATGATATGGCCAGGGCTGAGAGACGGAAGGTGGCGTTGAATTCTAAGTCGGATTGA

Predicted protein sequences of Glyma10g05750

Limit To All Plant Sequences

>Glyma10g05750.1   sequence type=predicted peptide   gene model=Glyma10g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTPTPLKAVTLTHVRYQRGDGVGHFLAWISLVPVFISLGGFVSHFIFRRELQGIFFALGLIVSQFINEVIKTSVQQARPATCALLEMCDSHGWPSSHCQYMFFFATYLTLLSLRGLSFWHVRDNPLLHALTWSLAVLTMYSRVYLGYHTVAQVFAGTALGVFLGAVWFWVVNSVLHPYFPIIEESAFGRWFYVKDTSHIPNVLKFEYDMARAERRKVALNSKSD*

>Glyma10g05750.2   sequence type=predicted peptide   gene model=Glyma10g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTPTPLKAVTLTHVRYQRGDGVGHFLAWISLVPVFISLGGFVSHFIFRRELQGIFFALGLIVSQFINEVIKTSVQQARPATCALLEMCDSHGWPSSHCQYMFFFATYLTLLSLRGLSFWHVRDNPLLHALTWSLAVLTMYSRVYLGYHTVAQVFAGTALGVFLGAVWFWVVNSVLHPYFPIIEESAFGRWFYVKDTSHIPNVLKFEYDMARAERRKVALNSKSD*

>Glyma10g05750.3   sequence type=predicted peptide   gene model=Glyma10g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTPTPLKAVTLTHVRYQRGDGVGHFLAWISLVPVFISLGGFVSHFIFRRELQGIFFALGLIVSQFINEVIKTSVQQARPATCALLEMCDSHGWPSSHCQYMFFFATYLTLLSLRGLSFWHVRDNPLLHALTWSLAVLTMYSRVYLGYHTVAQVFAGTALGVFLGAVWFWVVNSVLHPYFPIIEESAFGRWFYVKDTSHIPNVLKFEYDMARAERRKVALNSKSD*

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