Report for Sequence Feature Glyma10g05720
Feature Type: gene_model
Chromosome: Gm10
Start: 4477640
stop: 4481520
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g05720
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G03040 AT
Annotation by Michelle Graham. TAIR10: IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461
SoyBase E_val: 9.00E-139 ISS
GO:0006007 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucose catabolic process
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0048767 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair elongation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
PTHR10699 Panther
FAMILY NOT NAMED
JGI ISS
PTHR10699:SF9 Panther
CALMODULIN BINDING
JGI ISS
PF00612 PFAM
IQ calmodulin-binding motif
JGI ISS
UniRef100_G7L1R6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L1R6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1L8S7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8S7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g05720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g05720
Paralog Evidence Comments
Glyma13g20070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g05720 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g050000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g05720
Transcripts of Glyma10g05720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g05720.2 sequence type=transcript gene model=Glyma10g05720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GCTTTGTGACTTGTGAGGTATGATATCTTGAAATTTACATATTTTCCGTATAAAGGGCTCAAAGTGAGGAATGCGAAGAAAATGGGGAGGAAAGGAAATAGTTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACTTCAGAATCAACCTCACAATCTGATAATGCACCACCTCTTCCTCTACCTGAGATTATTTTAACTCATGTCGAGAGTGAAATCAACCATGATCGGGTTGAAGTTGCAACTGCAGTGGATGCTGAGGAACCTGTTCTTGCAGTTCAGACAGCAGCTGCTGAGGTTCAAGCCACAACAATTGTTCAGTTTGACAATAAACCAACAGAAGAAATGGCAGCAATCAGGATTCAAAAAGCTTTTCGTGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGTTGGTCAGGTTGAGATCACTGATGGAAGGGCCAGTGGTGAAACGTCAAGCCATTAGTACCCTCCGTTCTATGCAGACTTTTGCTCATTTGCAAACTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAGGAGAATCAAGCACTACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGCTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCATAACTGGAAGAATGCATCAAGATCTATAAACCCAATGTTCATGGATCCAACCAATCCAGCCTGGGGTTGGAGTTGGTTGGAACGATGGACGGCAGCCCGGCCCTGGGAGAGCCATAGCCAGATGGAGAAAGAGAAGAATGGCAATAAATCTCTAAGAAGTTCTAGCCGTGGCATTACCAGTGCTGAAATCAGCAAAGCATTTGCTAAGTTTCAGCTCAATTCTGAGAAGCATTCTCCAACAGCCAGCCAAAATCCAGGCTCACCTAACTTCGAGTCGCATTCCCAATCCCATTCAAATCCTCCCAAGCCACCTTCTCCAGCAGTTGCTAAGAAACTGAAGAAAGCAAGTCCTAAGGATATCTTGGCTATAGATGATGACACCAAAAGCATGATAAGCGTGCAGTCAGAGCGGCCGCGGAGGCACTCCATTGCTGGATCGATAGTTGGAGATGACGAAAGCCTTGCAAGCTCTCCATCTATTCCAAGTTACATGGTGCCAACTAAATCTGCGAAAGCCAAGTCCCGGATGCAAAGTCCATTAGCAGCAGAATACGGAACACCAGAAAAAGGGTCCTCCGGGACTGCAAAGAAACGTCTTTCTTTCCCAGCTTCGCCTGCTAGGCCAAGGAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTCAATGCTGAAATCACTGTGGGAAATGGTGTGGCTGGTTGATTATGTAGCCACAGAAAAAATGATGCAATGCAAGCAAGCATTTGAAATGCCATGGCAAAAAATAAGACAAAAGTTCATTTGAATTGTTCCTTTATTTATTTATCATGTGTATCTCAATCTTGTGATTTCTTGGAGGCTATTGGTTTGGGGGTGAAAACTGTTTTACCTTCTACATTTTATCTATTTGTATTCTCATGTAGCTCACAATTTGCACTGAGAAGTTGAAAGGTGTGATTCATGATAGTATTATGGACAAAGTTAGAAGCCTTTCGGAGCTTCCCCAGTATCTTTCTGTTACTATTGATTCTTACATGTGATATAAAATGTATATTTAATTTCATTGTCTCATTTCTTAGATGTTACTATGTTTGGTAATCTATGATATTTATGTTGTGTATGGCTTTCTTGGACCGTTATGCTGTATGATCCGGAGCAGAGAATTTGTGAACAGACC
Coding sequences of Glyma10g05720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g05720.1 sequence type=CDS gene model=Glyma10g05720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGAGGAAAGGAAATAGTTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACTTCAGAATCAACCTCACAATCTGATAATGCACCACCTCTTCCTCTACCTGAGATTATTTTAACTCATGTCGAGAGTGAAATCAACCATGATCGGGTTGAAGTTGCAACTGCAGTGGATGCTGAGGAACCTGTTCTTGCAGTTCAGACAGCAGCTGCTGAGGTTCAAGCCACAACAATTGTTCAGTTTGACAATAAACCAACAGAAGAAATGGCAGCAATCAGGATTCAAAAAGCTTTTCGTGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGTTGGTCAGGTTGAGATCACTGATGGAAGGGCCAGTGGTGAAACGTCAAGCCATTAGTACCCTCCGTTCTATGCAGACTTTTGCTCATTTGCAAACTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAGGAGAATCAAGCACTACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGCTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCATAACTGGAAGAATGCATCAAGATCTATAAACCCAATGTTCATGGATCCAACCAATCCAGCCTGGGGTTGGAGTTGGTTGGAACGATGGACGGCAGCCCGGCCCTGGGAGAGCCATAGCCAGATGGAGAAAGAGAAGAATGGCAATAAATCTCTAAGAAGTTCTAGCCGTGGCATTACCAGTGCTGAAATCAGCAAAGCATTTGCTAAGTTTCAGCTCAATTCTGAGAAGCATTCTCCAACAGCCAGCCAAAATCCAGGCTCACCTAACTTCGAGTCGCATTCCCAATCCCATTCAAATCCTCCCAAGCCACCTTCTCCAGCAGTTGCTAAGAAACTGAAGAAAGCAAGTCCTAAGGATATCTTGGCTATAGATGATGACACCAAAAGCATGATAAGCGTGCAGTCAGAGCGGCCGCGGAGGCACTCCATTGCTGGATCGATAGTTGGAGATGACGAAAGCCTTGCAAGCTCTCCATCTATTCCAAGTTACATGGTGCCAACTAAATCTGCGAAAGCCAAGTCCCGGATGCAAAGTCCATTAGCAGCAGAATACGGAACACCAGAAAAAGGGTCCTCCGGGACTGCAAAGAAACGTCTTTCTTTCCCAGCTTCGCCTGCTAGGCCAAGGAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTCAATGCTGAAATCACTGTGGGAAATGGTGTGGCTGGTTGA
>Glyma10g05720.2 sequence type=CDS gene model=Glyma10g05720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGAGGAAAGGAAATAGTTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACTTCAGAATCAACCTCACAATCTGATAATGCACCACCTCTTCCTCTACCTGAGATTATTTTAACTCATGTCGAGAGTGAAATCAACCATGATCGGGTTGAAGTTGCAACTGCAGTGGATGCTGAGGAACCTGTTCTTGCAGTTCAGACAGCAGCTGCTGAGGTTCAAGCCACAACAATTGTTCAGTTTGACAATAAACCAACAGAAGAAATGGCAGCAATCAGGATTCAAAAAGCTTTTCGTGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGTTGGTCAGGTTGAGATCACTGATGGAAGGGCCAGTGGTGAAACGTCAAGCCATTAGTACCCTCCGTTCTATGCAGACTTTTGCTCATTTGCAAACTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAGGAGAATCAAGCACTACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGCTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCATAACTGGAAGAATGCATCAAGATCTATAAACCCAATGTTCATGGATCCAACCAATCCAGCCTGGGGTTGGAGTTGGTTGGAACGATGGACGGCAGCCCGGCCCTGGGAGAGCCATAGCCAGATGGAGAAAGAGAAGAATGGCAATAAATCTCTAAGAAGTTCTAGCCGTGGCATTACCAGTGCTGAAATCAGCAAAGCATTTGCTAAGTTTCAGCTCAATTCTGAGAAGCATTCTCCAACAGCCAGCCAAAATCCAGGCTCACCTAACTTCGAGTCGCATTCCCAATCCCATTCAAATCCTCCCAAGCCACCTTCTCCAGCAGTTGCTAAGAAACTGAAGAAAGCAAGTCCTAAGGATATCTTGGCTATAGATGATGACACCAAAAGCATGATAAGCGTGCAGTCAGAGCGGCCGCGGAGGCACTCCATTGCTGGATCGATAGTTGGAGATGACGAAAGCCTTGCAAGCTCTCCATCTATTCCAAGTTACATGGTGCCAACTAAATCTGCGAAAGCCAAGTCCCGGATGCAAAGTCCATTAGCAGCAGAATACGGAACACCAGAAAAAGGGTCCTCCGGGACTGCAAAGAAACGTCTTTCTTTCCCAGCTTCGCCTGCTAGGCCAAGGAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTCAATGCTGAAATCACTGTGGGAAATGGTGTGGCTGGTTGA
Predicted protein sequences of Glyma10g05720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g05720.1 sequence type=predicted peptide gene model=Glyma10g05720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGRKGNSWFSTVKKALSPEPKEKNDQNSSRSKKKWFQKQKLQTSESTSQSDNAPPLPLPEIILTHVESEINHDRVEVATAVDAEEPVLAVQTAAAEVQATTIVQFDNKPTEEMAAIRIQKAFRGYLARRALRALRGLVRLRSLMEGPVVKRQAISTLRSMQTFAHLQTQIRSRRLRMLEENQALQKQLLQKHAKELESMRLGEEWDDSVQSKEQVEAKLLSKYEASMRRERAMAYSFSHQHNWKNASRSINPMFMDPTNPAWGWSWLERWTAARPWESHSQMEKEKNGNKSLRSSSRGITSAEISKAFAKFQLNSEKHSPTASQNPGSPNFESHSQSHSNPPKPPSPAVAKKLKKASPKDILAIDDDTKSMISVQSERPRRHSIAGSIVGDDESLASSPSIPSYMVPTKSAKAKSRMQSPLAAEYGTPEKGSSGTAKKRLSFPASPARPRRHSGPPKVESSFNAEITVGNGVAG*
>Glyma10g05720.2 sequence type=predicted peptide gene model=Glyma10g05720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGRKGNSWFSTVKKALSPEPKEKNDQNSSRSKKKWFQKQKLQTSESTSQSDNAPPLPLPEIILTHVESEINHDRVEVATAVDAEEPVLAVQTAAAEVQATTIVQFDNKPTEEMAAIRIQKAFRGYLARRALRALRGLVRLRSLMEGPVVKRQAISTLRSMQTFAHLQTQIRSRRLRMLEENQALQKQLLQKHAKELESMRLGEEWDDSVQSKEQVEAKLLSKYEASMRRERAMAYSFSHQHNWKNASRSINPMFMDPTNPAWGWSWLERWTAARPWESHSQMEKEKNGNKSLRSSSRGITSAEISKAFAKFQLNSEKHSPTASQNPGSPNFESHSQSHSNPPKPPSPAVAKKLKKASPKDILAIDDDTKSMISVQSERPRRHSIAGSIVGDDESLASSPSIPSYMVPTKSAKAKSRMQSPLAAEYGTPEKGSSGTAKKRLSFPASPARPRRHSGPPKVESSFNAEITVGNGVAG*