Report for Sequence Feature Glyma10g05660
Feature Type: gene_model
Chromosome: Gm10
Start: 4431296
stop: 4433008
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g05660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G02960 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142
SoyBase E_val: 3.00E-93 ISS
GO:0006412 GO-bp
Annotation by Michelle Graham. GO Biological Process: translation
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005840 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ribosome
SoyBase N/A ISS
GO:0015935 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit
SoyBase N/A ISS
GO:0022626 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome
SoyBase N/A ISS
GO:0022627 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit
SoyBase N/A ISS
GO:0003735 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome
SoyBase N/A ISS
KOG1749
KOG
40S ribosomal protein S23
JGI ISS
PTHR11652 Panther
30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER
JGI ISS
PTHR11652:SF2 Panther
UNCHARACTERIZED
JGI ISS
PF00164 PFAM
Ribosomal protein S12
JGI ISS
UniRef100_I1L8S1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Papilionoideae RepID=I1L8S1_SOYBN
SoyBase E_val: 1.00E-97 ISS
UniRef100_Q9M5Z9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S23 n=1 Tax=Euphorbia esula RepID=RS23_EUPES
SoyBase E_val: 8.00E-97 ISS
Expression Patterns of Glyma10g05660
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g05660
Paralog Evidence Comments
Glyma13g20010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g05660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g049400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g05660
Transcripts of Glyma10g05660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g05660.3 sequence type=transcript gene model=Glyma10g05660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATAGGCCCAGTGGTGCTTAACAAACCCAGTGGTGTTTTCATTTTAGTCCACTATATAAACCCCCTACTTCGCTTATCGATTAGGGTTTTGTGCTGTTGTCGCTGCTCATCCTCCATAACCTCCGAGCTCTACACCGAAGAACGAAGCCATGGGGAAGACACATGGAATGGGAGCTGCTCGCAAGCTCAAGTCTCACCGCAGGAGGCAAAGGTGGGCTGATAAGTCATACAAGAAATCCCATCTTGGGAATGAATGGAAGAAACCTTTTGCCGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAAGCTAAGCAGCCCAACTCTGCTATTCGTAAGTGTGCCAGAGTTCAACTTATCAAGAATGGGAAGAAAATTGCAGCTTTTGTCCCTAATGATGGTTGCTTGAACTACATTGAAGAGAATCCGTTGTGTAACTTGGAAATGGTTGTGTAGGACGAAGTCTTGATTGCTGGATTTGGACGAAAGGGTCATGCTGTGGGAGATATTCCTGGTGTCAGATTTAAGGTTGTGAAGGTATCTGGTGTCTCTCTTCTGGCTCTTTTCAAGGAGAAGAAGGAGAAACCAAGGTCTTAAATTTGTGAAATGCTTCTTATGTTTGTTTTCAATAGTTTCTCTGAAGTATTACGAATTTTGTTTTGAGGTGAATGGGTTTTATGAACAATTTTGTATCTTTTTTAGTTATTTTACTGAACTTCATTTAGCATTTTTAGTAACATATCTTAGCTTGCTTGCCTCGGCTTTGCTTCTTCCCCATTCTCTGGCTTCTTGCTATAAACTTTCACTGAATATATAGCCATTGAAGGTTTAGCAATTGCTACTGTTAATGAAATCGATAAACTGGAGATGATAGGCATAGGAGCTACCTAATACTAGTTAGATATCTGATCCTATTTTCAATTCTCCAGTT
Coding sequences of Glyma10g05660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g05660.1 sequence type=CDS gene model=Glyma10g05660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGAAGACACATGGAATGGGAGCTGCTCGCAAGCTCAAGTCTCACCGCAGGAGGCAAAGGTGGGCTGATAAGTCATACAAGAAATCCCATCTTGGGAATGAATGGAAGAAACCTTTTGCCGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAAGCTAAGCAGCCCAACTCTGCTATTCGTAAGTGTGCCAGAGTTCAACTTATCAAGAATGGGAAGAAAATTGCAGCTTTTGTCCCTAATGATGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAGGGTCATGCTGTGGGAGATATTCCTGGTGTCAGATTTAAGGTTGTGAAGGTATCTGGTGTCTCTCTTCTGGCTCTTTTCAAGGAGAAGAAGGAGAAACCAAGGTCTTAA
>Glyma10g05660.3 sequence type=CDS gene model=Glyma10g05660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGAAGACACATGGAATGGGAGCTGCTCGCAAGCTCAAGTCTCACCGCAGGAGGCAAAGGTGGGCTGATAAGTCATACAAGAAATCCCATCTTGGGAATGAATGGAAGAAACCTTTTGCCGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAAGCTAAGCAGCCCAACTCTGCTATTCGTAAGTGTGCCAGAGTTCAACTTATCAAGAATGGGAAGAAAATTGCAGCTTTTGTCCCTAATGATGGTTGCTTGAACTACATTGAAGAGAATCCGTTGTGTAACTTGGAAATGGTTGTGTAG
Predicted protein sequences of Glyma10g05660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g05660.1 sequence type=predicted peptide gene model=Glyma10g05660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*
>Glyma10g05660.3 sequence type=predicted peptide gene model=Glyma10g05660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENPLCNLEMVV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
