Report for Sequence Feature Glyma10g05630
Feature Type: gene_model
Chromosome: Gm10
Start: 4418297
stop: 4420751
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g05630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G09650 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:2958704-2961040 FORWARD LENGTH=778
SoyBase E_val: 0 ISS
GO:0000023 GO-bp
Annotation by Michelle Graham. GO Biological Process: maltose metabolic process
SoyBase N/A ISS
GO:0006397 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA processing
SoyBase N/A ISS
GO:0019252 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0003729 GO-mf
Annotation by Michelle Graham. GO Molecular Function: mRNA binding
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_D7L8B1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: HCF152 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L8B1_ARALL
SoyBase E_val: 0 ISS
UniRef100_UPI000233CB03 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233CB03 related cluster n=1 Tax=unknown RepID=UPI000233CB03
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g05630
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g05630
Paralog Evidence Comments
Glyma13g19990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g05630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g049200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g05630
Coding sequences of Glyma10g05630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g05630.1 sequence type=CDS gene model=Glyma10g05630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACGCCACACTCTTACAACCCCCACTCTCTCCCTTCCAACGCGCCACCACCACAAACTCCCCGGAACCCCGCGACCAGAAGCTTCTCTCCCTCCTTCGAGACCGCAAAACCGAAGAAGCCTGGCTCGCTTACTCCCACTCCACGCACCTCCCTAACCCCACCTGCCTCAGTCGCTTGGTCTCTCAGCTCTCTTACCAGAACACACTCTCTTCTCTCACGCGCGCCCAGTCCATCGTCACCCGCCTCCGCAATGAGCGCCAGCTTCACCGCCTCGACGCCAACTGCCTCGGCCTCCTCGCCGTCTCCGCCACCAAGGCCAACCACACGCTCTACGCCGCCTCCCTCCTCCGCTCCATGCTCCGCTCCGGCTACCTCCCCCACGTTAAGGCCTGGACCGCCGTCGTCGCCTGCCTCGCCTCCTCCCCTGACCGCGGCGATGGCCCCGCCGAGGCCCTCCAGCTCTTCCGCTCCGTCACGCGCCGCCTCCGCCGGCTCCCCGACCCCGCCATGGCCGCCGCGTCGCGCCCCGACACGGCCGCCGTCAACGCCGCGCTCAACGCCTGCGCCAATTTGGGTGATCCCAGGGCCTTCTTGCAGGTGTTCGATGAAATGCCGCAGTTCAATGTTGCCCCTGATGCGTTGAGTTATAACACTATGATTAAGCTGTGTTGTAGAATTGGTAGAAAGGACTTGCTTGTGTTTGTTCTGGAGAGGGTTCTTCAGTTGGAGATTCCTTTTTGTGTCACCACTTTGCAGTCCCTTGTTTCTGCTTATGTTGAGTTTGGTGATTTGGAAACTGCTGAGAAATTGGTTCAGGCAATGAGGGAAGAAAGGAGGGATATTTGTAGGGTGCTGAAGGAGTGTAGCAATTTAGAGTATTCGAGTGGTAATGAATCAAGTGATGATGATGATGATGATGATGATGATGATGATGATGACAATGATTGCATTTTTGAGAAGTTGCTTCCGAATTTGGTCGATCAAAGTGGCAATGAGGTTGAACCACCCTTGTTGCCAAAAGGTTATGCTCCAAACACTAGGACTTACACCACTCTAATGAAGGGTTATATGAATGCAGGACGTGTGAGTGATACGGTGAGGATGCTTGAGGCGATGCGGCGGCTGGATGATAAGGGTAGTCAACCTGATCATGTTTCCTACACCACTGTGGTTTCGGCACTTGTTAAGGTGGGTGCCATGGACCGCGCTCGTCAGGTTCTTGCTGAGATGACCAGGATTGGCGTGCCTGCGAATTTGATAACTTACAATGTTCTCCTCAAGGGTTATTGCAAACAGCTGCAGATAGATAAGGCAAGGGAATTGCTCAAGGAGATGGTTGATGATGCAGGGATACAGCCGGATGTGGTGTCTTATAACATACTCATTGATGGGTGTATACTGGTGGATGACAGTGCTGGGGCTCTTTCCTTCTTTAATGAGATGAGAGCAAGAGGAATAGCTCCCACCAAGATTAGTTACACTACTTTGATGAAGGCTTTCGCATACTCGGGTCAGCCGAAGCTTGCTCACAGAGTGTTTAACGAGATGGACAGTGACCCTCGGGTGAAGGTGGATTTGATCGCGTGGAACATGTTGGTGGAAGGATATTGCAGGTTGGGGTTGGTGGAAGAGGCGAAGAAAGTGGTTCAGAAGATGAAGGAGAGTGGATTTCACCCTGATGTGGGCACTTATGGCAGTTTAGCCAACGGAATTGCATTGGCAAGGAAACCCGGAGAGGCACTTCTGCTTTGGAACGAAGTGAAGGAGAGGTGTGAGGTGGGAAAGGAAGGGGGGAAATCTGATTCTTCTGTTCCTCCGTTGAAACCGGATGGAGCGCTTTTAGATACTATTGCTGATATCTGTGTGAGGGCTGCTTTCTTTAGAAAGGCATTGGAAATAGTGGCTTGCATGGAGGAGAATGGGATACCTCCCAACAAGACCAAGTTTACTAGAATCTATGTGGAAATGCATTCAAGAATGTTTACTAGTAAGCATGCTTCAAGGGCTAGACAAGACAGAAGAGTAGAGAGGAAAAGGGCTGCTGAGGCGTTTAAGTTTTGGCTGGGTTTGCCTAATTCCTATTATGATGGAAGTGAGTGGCGGTTAGAACCTATGGAAGGGTATGGCAATACCTCTGATTCGGTTTAG
Predicted protein sequences of Glyma10g05630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g05630.1 sequence type=predicted peptide gene model=Glyma10g05630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNATLLQPPLSPFQRATTTNSPEPRDQKLLSLLRDRKTEEAWLAYSHSTHLPNPTCLSRLVSQLSYQNTLSSLTRAQSIVTRLRNERQLHRLDANCLGLLAVSATKANHTLYAASLLRSMLRSGYLPHVKAWTAVVACLASSPDRGDGPAEALQLFRSVTRRLRRLPDPAMAAASRPDTAAVNAALNACANLGDPRAFLQVFDEMPQFNVAPDALSYNTMIKLCCRIGRKDLLVFVLERVLQLEIPFCVTTLQSLVSAYVEFGDLETAEKLVQAMREERRDICRVLKECSNLEYSSGNESSDDDDDDDDDDDDDNDCIFEKLLPNLVDQSGNEVEPPLLPKGYAPNTRTYTTLMKGYMNAGRVSDTVRMLEAMRRLDDKGSQPDHVSYTTVVSALVKVGAMDRARQVLAEMTRIGVPANLITYNVLLKGYCKQLQIDKARELLKEMVDDAGIQPDVVSYNILIDGCILVDDSAGALSFFNEMRARGIAPTKISYTTLMKAFAYSGQPKLAHRVFNEMDSDPRVKVDLIAWNMLVEGYCRLGLVEEAKKVVQKMKESGFHPDVGTYGSLANGIALARKPGEALLLWNEVKERCEVGKEGGKSDSSVPPLKPDGALLDTIADICVRAAFFRKALEIVACMEENGIPPNKTKFTRIYVEMHSRMFTSKHASRARQDRRVERKRAAEAFKFWLGLPNSYYDGSEWRLEPMEGYGNTSDSV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
