Glyma10g05580 - SoyBase

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Report for Sequence Feature Glyma10g05580

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4357324
stop:	4360487
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09630	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L4/L1 family \| chr3:2953813-2955444 FORWARD LENGTH=406	SoyBase	E_val: 0	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1475	KOG	Ribosomal protein RPL1/RPL2/RL4L4	JGI		ISS
PTHR19431	Panther	60S RIBOSOMAL PROTEIN L4	JGI		ISS
PF00573	PFAM	Ribosomal protein L4/L1 family	JGI		ISS
UniRef100_G7I6N5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L4 n=1 Tax=Medicago truncatula RepID=G7I6N5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L8R1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8R1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g05580 not represented in the dataset	Glyma10g05580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05580

Paralog	Evidence	Comments
Glyma13g19930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g048600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g05580

Limit To All Plant Sequences

>Glyma10g05580.2   sequence type=transcript   gene model=Glyma10g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGATACGAAACCCTAAGAATTCTGATGATACTATATATTCATCGCATCACGAAAATCCCTAACTCACTCGAACCCCCCAAAACCCTAGGTAGAGAGCTCTTCCTCACTCTCATTCGCAATGGCCGCAGCAGCACGTCCTCTCGTCACCGTGCAGGCCCTCGACAGTGACATGGCCACCGACGCCTCCGCCACCGTCCCTATCCCTGACGTCATGAAGTCCTCCATCCGCCCGGACATCGTCAACTTCGTACACTCCAACATCTCCAAGAACAGCCGACAACCCTATGCAGTCAGCCGCCGCGCTGGCCACCAGACTTCCGCCGAGTCCTGGGGAACCGGTCGTGCCGTCTCCCGTATCCCCCGTGTTCCCGGCGGCGGAACCCATCGCGCCGGCCAGGGAGCCTTCGGAAACATGTGTCGTGGAGGACGCATGTTTGCCCCGACCAAGATCTGGCGCCGCTGGCACAGGAAAATCAATGTGAACCAGAAGCGCTACGCCGTTGTCTCCGCCATCGCTGCCTCCGCCATCCCCTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGTCCGTCCCGGAGCTCCCACTCGTCGTTAGCGACTCCGCCGAGAGCGTCGAGAAAACAAAAGAAGCAATCAAAGTCCTCAAGCAGATCGGAGCATTCCCTGACGCAGAGAAAGCAAAAGACAGTCGCAGCATTCGTCCTGGAAAGGGGAAAATGCGTAACCGTCGCTACATCTCACGCCGTGGACCACTCATCGTGTACGGAACGGAAGGAGCCAAAGCCGTTAAGGCCTTCCGTAACGTCCCCGGCGTGGAAGTCGCTAACGTCGAGAGGCTTAACCTTCTGAAACTTGCTCCAGGAGGACACCTCGGGAGGTTTGTGGTTTGGACAAAAAGCGCTTTTGAGAAGCTGGATTCGATTTATGGGTCTTTTGATAAGCCCTCTGAGAAGAAGAAGGGGTACTTGCTTCCCAGGCCCAAGATGGTTAACTCTGATCTTGCCAGGATTATTAATTCTGACGAGGTTCAGTCTGTTGTGAGGCCCATTAAGAAGGATGTGAAGAAGGCCACGCTGAAGAAGAACCCTCTTAAGAACCTGAACTCTATGCTGAAGCTGAATCCTTATGCCAAGACTGCTAAGAGGATGGCTCTTCTTGCTGAAGCTCAGCGCGTTAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGACTGTCTCTAAGTTTGATTTTTGAATTTTGGTTTCAATTTTGAGAAGGAAAGATCACATGAACCCTAACGCAAATCCTGACGAGCAGCGAGCAACACCATGCGATCTTAGAGGCACAGTCAAGAATACTCTTTCTCTGTCTTCTGTTTCATTCTGCTATACCTTTTTCTCATAATTTATGGGGAAAACGATGCACCTTTCGTTCAGCAAACGCCACACGGTCTCAAAATCAAGTTTCGAACAAATGTTTTTGTGATAGTAATTTTATTCAAGAATGGAATGATAATCTTTTCTCATTATTGTTTATTAATGGTGAAATGACCCTAAAGTCTTTAGCAAAAACAGATTCTATATTTTAAAGTTGAGTTCTTTATGAATTCAACGATTCTTAAGTCTGCAGTAAGAACAAATGATCCTTGATGGTCCTA

Coding sequences of Glyma10g05580

Limit To All Plant Sequences

>Glyma10g05580.1   sequence type=CDS   gene model=Glyma10g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCAGCAGCACGTCCTCTCGTCACCGTGCAGGCCCTCGACAGTGACATGGCCACCGACGCCTCCGCCACCGTCCCTATCCCTGACGTCATGAAGTCCTCCATCCGCCCGGACATCGTCAACTTCGTACACTCCAACATCTCCAAGAACAGCCGACAACCCTATGCAGTCAGCCGCCGCGCTGGCCACCAGACTTCCGCCGAGTCCTGGGGAACCGGTCGTGCCGTCTCCCGTATCCCCCGTGTTCCCGGCGGCGGAACCCATCGCGCCGGCCAGGGAGCCTTCGGAAACATGTGTCGTGGAGGACGCATGTTTGCCCCGACCAAGATCTGGCGCCGCTGGCACAGGAAAATCAATGTGAACCAGAAGCGCTACGCCGTTGTCTCCGCCATCGCTGCCTCCGCCATCCCCTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGTCCGTCCCGGAGCTCCCACTCGTCGTTAGCGACTCCGCCGAGAGCGTCGAGAAAACAAAAGAAGCAATCAAAGTCCTCAAGCAGATCGGAGCATTCCCTGACGCAGAGAAAGCAAAAGACAGTCGCAGCATTCGTCCTGGAAAGGGGAAAATGCGTAACCGTCGCTACATCTCACGCCGTGGACCACTCATCGTGTACGGAACGGAAGGAGCCAAAGCCGTTAAGGCCTTCCGTAACGTCCCCGGCGTGGAAGTCGCTAACGTCGAGAGGCTTAACCTTCTGAAACTTGCTCCAGGAGGACACCTCGGGAGGTTTGTGGTTTGGACAAAAAGCGCTTTTGAGAAGCTGGATTCGATTTATGGGTCTTTTGATAAGCCCTCTGAGAAGAAGAAGGGGTACTTGCTTCCCAGGCCCAAGATGGTTAACTCTGATCTTGCCAGGATTATTAATTCTGACGAGGTTCAGTCTGTTGTGAGGCCCATTAAGAAGGATGTGAAGAAGGCCACGCTGAAGAAGAACCCTCTTAAGAACCTGAACTCTATGCTGAAGCTGAATCCTTATGCCAAGACTGCTAAGAGGATGGCTCTTCTTGCTGAAGCTCAGCGCGTTAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGACTGTCTCTAAGGAGGAAGCTTCTGCCATCAAGTCTGCTGGGAAAGCATGGTATCACACTATGGTGTCAGATTCTGATTATACAGAATTCGACAACTTTTCTAAGTGGCTGGGTGTTTCACAGTAA

>Glyma10g05580.2   sequence type=CDS   gene model=Glyma10g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCAGCAGCACGTCCTCTCGTCACCGTGCAGGCCCTCGACAGTGACATGGCCACCGACGCCTCCGCCACCGTCCCTATCCCTGACGTCATGAAGTCCTCCATCCGCCCGGACATCGTCAACTTCGTACACTCCAACATCTCCAAGAACAGCCGACAACCCTATGCAGTCAGCCGCCGCGCTGGCCACCAGACTTCCGCCGAGTCCTGGGGAACCGGTCGTGCCGTCTCCCGTATCCCCCGTGTTCCCGGCGGCGGAACCCATCGCGCCGGCCAGGGAGCCTTCGGAAACATGTGTCGTGGAGGACGCATGTTTGCCCCGACCAAGATCTGGCGCCGCTGGCACAGGAAAATCAATGTGAACCAGAAGCGCTACGCCGTTGTCTCCGCCATCGCTGCCTCCGCCATCCCCTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGTCCGTCCCGGAGCTCCCACTCGTCGTTAGCGACTCCGCCGAGAGCGTCGAGAAAACAAAAGAAGCAATCAAAGTCCTCAAGCAGATCGGAGCATTCCCTGACGCAGAGAAAGCAAAAGACAGTCGCAGCATTCGTCCTGGAAAGGGGAAAATGCGTAACCGTCGCTACATCTCACGCCGTGGACCACTCATCGTGTACGGAACGGAAGGAGCCAAAGCCGTTAAGGCCTTCCGTAACGTCCCCGGCGTGGAAGTCGCTAACGTCGAGAGGCTTAACCTTCTGAAACTTGCTCCAGGAGGACACCTCGGGAGGTTTGTGGTTTGGACAAAAAGCGCTTTTGAGAAGCTGGATTCGATTTATGGGTCTTTTGATAAGCCCTCTGAGAAGAAGAAGGGGTACTTGCTTCCCAGGCCCAAGATGGTTAACTCTGATCTTGCCAGGATTATTAATTCTGACGAGGTTCAGTCTGTTGTGAGGCCCATTAAGAAGGATGTGAAGAAGGCCACGCTGAAGAAGAACCCTCTTAAGAACCTGAACTCTATGCTGAAGCTGAATCCTTATGCCAAGACTGCTAAGAGGATGGCTCTTCTTGCTGAAGCTCAGCGCGTTAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGACTGTCTCTAAGTTTGATTTTTGA

Predicted protein sequences of Glyma10g05580

Limit To All Plant Sequences

>Glyma10g05580.1   sequence type=predicted peptide   gene model=Glyma10g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAARPLVTVQALDSDMATDASATVPIPDVMKSSIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIESVPELPLVVSDSAESVEKTKEAIKVLKQIGAFPDAEKAKDSRSIRPGKGKMRNRRYISRRGPLIVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRPKMVNSDLARIINSDEVQSVVRPIKKDVKKATLKKNPLKNLNSMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKTVSKEEASAIKSAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ*

>Glyma10g05580.2   sequence type=predicted peptide   gene model=Glyma10g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAARPLVTVQALDSDMATDASATVPIPDVMKSSIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIESVPELPLVVSDSAESVEKTKEAIKVLKQIGAFPDAEKAKDSRSIRPGKGKMRNRRYISRRGPLIVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRPKMVNSDLARIINSDEVQSVVRPIKKDVKKATLKKNPLKNLNSMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKTVSKFDF*

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