Glyma10g05560 - SoyBase

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Report for Sequence Feature Glyma10g05560

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4346521
stop:	4352186
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09600	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr3:2946459-2948270 FORWARD LENGTH=298	SoyBase	E_val: 5.00E-134	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0032922	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian regulation of gene expression	SoyBase	N/A	ISS
GO:0043966	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3 acetylation	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0048574	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0724	KOG	Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains	JGI		ISS
PTHR12802	Panther	SWI/SNF COMPLEX-RELATED	JGI		ISS
PTHR12802:SF30	Panther	OS06G0105800 PROTEIN	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_I1L8Q8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L8Q8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0PJJ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB118 n=1 Tax=Glycine max RepID=Q0PJJ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05560

Paralog	Evidence	Comments
Glyma13g19910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g048500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g05560

Limit To All Plant Sequences

>Glyma10g05560.2   sequence type=transcript   gene model=Glyma10g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATATTTTGTCCGGATGGGACCGAACAAGGGACGATGAAATCAGTGTGGTGGAAAGAAGTTGTGTTTGTGTTTGTGTTTGGTGTTGGGACAATTGATATTGGTGGCTCTCAAATTGTGAACCGCACATATACCCACCCTGCTTCCCACGCCACATCGTTCTCCCTCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGCTCTTTCTTGTTGAAACTGTGAGTCTATGTTATTTGTGGCGGAGCATGAACTCCACCACCAACACTTCGAATTCTCAGTCAATGGCTGCAGCAGCACCGAGTGATGGTTCTGGGAAGAAGGTAAGAAAGCCTTACACCATAACCAAGTCCAGAGAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCTGGAGCCGATAAACCCATGACCTGTCAGGATGAACTCAACAATCTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAGCACAGATTACCAACAGCAGTCTCAGTGGTGTAGGAAATTCTACTGGAGCACTACCGACTTCTGAGATACCCAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTATTTGATCCAGAAACAAACGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCTGATAGAACGGGGAGACACCCCCAATACCTACTGGGCAAGGCGCCAATGACCCATCCAAAAGATTACTGCACAAGCTTAAACCATAAGCAATTTTACCAACTACTCAACTAGTCCCTAGGCATCAAGGGATCTCTCTCAGAAGGCCCCGAAATGTTCTCACTTTCTAATTACATGTGAATGACATGATAGGATTTCCATGTAATAAATATAGGCTCTTGTATTAATTTTTTATTAACCCCAAATTACTTGAAAAATTAAAGTATTTATTAGATTAATAAGTGTATATAAATTTTAATATGAACTCTCATTAAAGAATTCATCAAAGATAAAAACAAAATGTTTTTTTTTATAAAAATACAAACAAATTAAAAGCATAGCTCAAATCCTCTCTATATATAAATTAGAATAATATCTTGGAAGAGTGTTTTTAGGACTTATTCTTCGCCGAAAGCATTTCTATAGGATTTT

Coding sequences of Glyma10g05560

Limit To All Plant Sequences

>Glyma10g05560.1   sequence type=CDS   gene model=Glyma10g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTCCACCACCAACACTTCGAATTCTCAGTCAATGGCTGCAGCAGCACCGAGTGATGGTTCTGGGAAGAAGGTAAGAAAGCCTTACACCATAACCAAGTCCAGAGAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCTGGAGCCGATAAACCCATGACCTGTCAGGATGAACTCAACAATCTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAGCACAGATTACCAACAGCAGTCTCAGTGGTGTAGGAAATTCTACTGGAGCACTACCGACTTCTGAGATACCCAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTATTTGATCCAGAAACAAACGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAAGGTATTGTCAACATATGATGTCAATACCGTGGCAGTAGGAATTGATGTCAAGACAAATGATCTATCATGTCAAACCGCTTAA

>Glyma10g05560.2   sequence type=CDS   gene model=Glyma10g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTCCACCACCAACACTTCGAATTCTCAGTCAATGGCTGCAGCAGCACCGAGTGATGGTTCTGGGAAGAAGGTAAGAAAGCCTTACACCATAACCAAGTCCAGAGAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCTGGAGCCGATAAACCCATGACCTGTCAGGATGAACTCAACAATCTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAGCACAGATTACCAACAGCAGTCTCAGTGGTGTAGGAAATTCTACTGGAGCACTACCGACTTCTGAGATACCCAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTATTTGATCCAGAAACAAACGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCTGA

Predicted protein sequences of Glyma10g05560

Limit To All Plant Sequences

>Glyma10g05560.1   sequence type=predicted peptide   gene model=Glyma10g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSTTNTSNSQSMAAAAPSDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYASSRNTLAPGFASWDETSLLMNAGADKPMTCQDELNNLHHGNEADIGSKGIAQITNSSLSGVGNSTGALPTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPETNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKVLSTYDVNTVAVGIDVKTNDLSCQTA*

>Glyma10g05560.2   sequence type=predicted peptide   gene model=Glyma10g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSTTNTSNSQSMAAAAPSDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYASSRNTLAPGFASWDETSLLMNAGADKPMTCQDELNNLHHGNEADIGSKGIAQITNSSLSGVGNSTGALPTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPETNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPI*

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