Glyma10g05540 - SoyBase

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Report for Sequence Feature Glyma10g05540

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4321198
stop:	4324043
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02820	AT	Annotation by Michelle Graham. TAIR10: Spo11/DNA topoisomerase VI, subunit A protein \| chr5:642658-644123 FORWARD LENGTH=427	SoyBase	E_val: 0	ISS
GO:0006259	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA metabolic process	SoyBase	N/A	ISS
GO:0006265	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA topological change	SoyBase	N/A	ISS
GO:0009957	GO-bp	Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005694	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromosome	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003918	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG2795	KOG	Catalytic subunit of the meiotic double strand break transesterase	JGI		ISS
PTHR10848	Panther	MEIOTIC RECOMBINATION PROTEIN SPO11	JGI		ISS
PF04406	PFAM	Type IIB DNA topoisomerase	JGI		ISS
UniRef100_B9SGS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Meiotic recombination protein spo11, putative n=1 Tax=Ricinus communis RepID=B9SGS8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L8Q6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8Q6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05540

Paralog	Evidence	Comments
Glyma13g19890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g048300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05540

Limit To All Plant Sequences

>Glyma10g05540.1   sequence type=CDS   gene model=Glyma10g05540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGACAACAAAAAGCGCCGGCGAAAGGACCCCGCCGGCGACGAGCTCCCCTTCAAAAACAAGCTGAAACCGGACTCCGCAATCATGGAAACCCTAAAGCAGTTCTCCGCCTCATCCTCCTCCTCCTCCGCCTCCGTCTCACAAACCCTAACCCTCCAGGACCTCTCCCTCCCCTTCCGCTGCCGCGAGGTGGCGGACCTCTCCCTCTCCTCCGTGCAGTCCAACATCGAGTCCCTCATTCTCCGGATCGCCCACTCCATCCTCTCTGGCCACGGCTTCTCCTTCGACGTCCCCTCCCGCTCCGCCGCCAACCAGCTCTACGTCCCCGAGCTCGACCGCATCGTCCTCAAGGACAAATCCTCTCTTCGCCCCTTCGCGAATATCTCCACCGTGCGGAAGTCCGCCATCACCGCCCGCATTCTGCAGCTCATCCACCAGCTTTGCCTCAAGGGCATCCACGTCACCAAGCGTGACCTCTTCTACACCGACGTCAAACTCTTCCAGGACCAGATCCAATCTGATGCTGTTCTGGATGATGTGTCCTGCATGCTGGGGTGCACTCGGTCCAGCCTCAATGTTGTGGCTGCAGAGAAAGGGGTGGTGGTTGGGAGGTTGATTTTCAGTGACAATGGGGATATGATTGATTGCACCAAAATGGGGATGGGCGGGAAGGCAATTCCACCGAATATTGATCGAGTTGGGGATATGCAGAGTGATGCTTTGTTCATTCTGTTGGTGGAGAAGGATGCTGCTTATATGAGGTTGGCTGAGGATAGGTTCTATAACCGCTTTCCATGCATAATTGTGACTGCAAAGGGGCAGCCCGATGTTTCCACTAGGCTGTTCTTGAGGAAGATGAAGATAGAGTTAAAGCTGCCGGTGCTGGCTCTAGTTGACAGTGATCCTTATGGGTTGAAGATTCTGTCGGTTTATGGCTGTGGGTCAAAGAACATGTCTTATGACAGTGCCAACTTAACCACCCCTGATATCAAGTGGCTTGGGGTTAGGCCTAGTGATTTGGACAAGTACAAGATACCTGAGCAGTGTAGGTTGCCGATGACCGAGCAGGATATTAAGACTGGCAAGGACTTGCTTGAGGAGGATTTTGTCAAAAAGAACCCTGGTTGGGTGGAGGAATTGACCTTGATGGTCAAAACTAAGCAAAAAGCTGAAATACAGGCTTTGAGCACCTTTGGTTTTCAGTATCTGTCAGAAGTTTATTTGCCCTTGAAGTTGCAGCAGAAGGATTGGCTGTGA

Predicted protein sequences of Glyma10g05540

Limit To All Plant Sequences

>Glyma10g05540.1   sequence type=predicted peptide   gene model=Glyma10g05540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNKKRRRKDPAGDELPFKNKLKPDSAIMETLKQFSASSSSSSASVSQTLTLQDLSLPFRCREVADLSLSSVQSNIESLILRIAHSILSGHGFSFDVPSRSAANQLYVPELDRIVLKDKSSLRPFANISTVRKSAITARILQLIHQLCLKGIHVTKRDLFYTDVKLFQDQIQSDAVLDDVSCMLGCTRSSLNVVAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVSTRLFLRKMKIELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSTFGFQYLSEVYLPLKLQQKDWL*

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