Glyma10g05520 - SoyBase

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Report for Sequence Feature Glyma10g05520

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4299077
stop:	4310984
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02810	AT	Annotation by Michelle Graham. TAIR10: pseudo-response regulator 7 \| chr5:638283-641461 REVERSE LENGTH=727	SoyBase	E_val: 4.00E-175	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0010017	GO-bp	Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048574	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR26402	Panther	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	JGI		ISS
PTHR26402:SF303	Panther		JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_B9SGT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sensory transduction histidine kinase, putative n=1 Tax=Ricinus communis RepID=B9SGT0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0001CA97B3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001CA97B3 related cluster n=1 Tax=unknown RepID=UPI0001CA97B3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05520

Paralog	Evidence	Comments
Glyma13g19871	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g048100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05520

Limit To All Plant Sequences

>Glyma10g05520.2   sequence type=CDS   gene model=Glyma10g05520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGGGTTGTCCAGATGAGTGTTGATGGCGACAGCAAAGAGCTGAAAGAACTGAATCAGCGCTTACGAGATGGGAAGAAGATTGCTGGTGGGGAGCATGGTTTATGCGAGGAAGTGAAATGTAATGGAATTGCTGAAGAAGTTAAGGTTGAACAGGGGGGGACTGTGGAGTCCTCCTCTGTCCAGCAGCATATACCACAGCCTCAAGGGGCAATAATTTGTTGGGAGAGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGATTGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCAGCAAACGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTTGTTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGGACTTCTATACAAGATTATGGGCCACAAAACCCGCAAAAATATTCCAGTAGTTATGATGTCATCTCATGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTATAAAATCAAAGAGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGACGAAGATGATAATGAAAGTATAGGCCTGAATAATGTGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCATGGACCAAACGTGCTGTAGAAGTTGATAGTCATAAACCAGTTTCCCAGTGGGATCAAATAGCTGAGTGCCCTGACAGTACCTGTGCTCAAGTTGTTCACTCCAATGCTGAAATGGGTGGGAACAAGGTGGTTCCTCTAGCTGCAAAGGATTGTGCAGAACAGAATGAACAACTTGTCAAAACTGCAGGTTCTCAACATAGCAATGCACCTGATGTCGGCCCCTCTAAATTCAGTGAGCAAATTAATAGAGGACAACTGGACCTTAATTGTGAAAATCAATCTAGCAAGCTAAGGTGCAAAGGTTTATCACTGTCTGATGCCATTACTAGTACTTGTGATTCTCAGATGCATAGTGGAGAATTTGAAGCCCTAAATAAAAAACCCAAGTCCTCAGATATTGAAAATAAAGGTACTAATAATGATGAAGAATTGCCATCTCTTGAGCTCAGTTTAAAGAGGCTTAGAGGAGTTGAAGATGCTGATATTACAATTCAGGATGACCGGAATGTTTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTCTAACACTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCTTATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCTCGTGATATTCAATCTCATTCTTGCGGCAATCCTCCTAACCAAAACTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTATGCTAAATCTGCAGTTATGAGTGAGCCAGCAGGGGCATCAACAACAAAATGTTTGTACCAAACATCTGCTTTCCAGCCTGTAAAAAACAGCCTTGTTTGTACCTCTCAACAAGTTGTCTTAAATAATACTGAAGATATGTCGGCAACAATTCTGGCACCACCTAAACTAGACAGACATAAAGATTCTGCAGCTCTGGACTTCCATCTCCATTGTGAAAACCATAACTGTATTGCTGACAACATGAAGCATCAGCTGCCACCTGATCATGATGCTGAATCTATAAAGAAAATGGCTACTGCTGCTCCACATTGTGGATCATCAAACGTGGAAGAAGTGCTAGTTGAAGGTAATGTTGGAAACCACAGTATCAATAGAAGTGTTTCAGGCAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGCACAGCAGTTAATGCTGGAGGGACAAACACGGAAAGCAACAATGGACTCACTGGGAATAGTGGCAGTGGTGATGCTAGTGGAAGTGGAAGTGCCAACAGAGTAGATCAAAACAAGACTTCTCAAAGGGAAGTGGCCTTAACTAAATTTCGCCAAAAGAGAAAAGAGAGAAGGGAGAGGTGCTTTCATAAAAAGGTTCGATATCAGAGCAGAAAGAGATTAGCTGAACAACGACCTCGATTTCGTGGACAATTTGTGCGACAGACCTCTAACGAAAATGCAAGTGAGGCAACAACAGATAGCTGA

Predicted protein sequences of Glyma10g05520

Limit To All Plant Sequences

>Glyma10g05520.2   sequence type=predicted peptide   gene model=Glyma10g05520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRVVQMSVDGDSKELKELNQRLRDGKKIAGGEHGLCEEVKCNGIAEEVKVEQGGTVESSSVQQHIPQPQGAIICWERFLHIRSLKVLLVEIDDSTRHVVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVAMPGLSGIGLLYKIMGHKTRKNIPVVMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSIKSKSLEKSDNNSGSNDEDDNESIGLNNVDGSDNGSGTQSSWTKRAVEVDSHKPVSQWDQIAECPDSTCAQVVHSNAEMGGNKVVPLAAKDCAEQNEQLVKTAGSQHSNAPDVGPSKFSEQINRGQLDLNCENQSSKLRCKGLSLSDAITSTCDSQMHSGEFEALNKKPKSSDIENKGTNNDEELPSLELSLKRLRGVEDADITIQDDRNVLRRSDQSAFSRYNAASNTKKSPTGCVGSNSPYNNSLEVTKKDSSRDIQSHSCGNPPNQNSNGASNNIDMGSTTNNAYAKSAVMSEPAGASTTKCLYQTSAFQPVKNSLVCTSQQVVLNNTEDMSATILAPPKLDRHKDSAALDFHLHCENHNCIADNMKHQLPPDHDAESIKKMATAAPHCGSSNVEEVLVEGNVGNHSINRSVSGSNNGSNGQNGSSTAVNAGGTNTESNNGLTGNSGSGDASGSGSANRVDQNKTSQREVALTKFRQKRKERRERCFHKKVRYQSRKRLAEQRPRFRGQFVRQTSNENASEATTDS*

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