Glyma10g05470 - SoyBase

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Report for Sequence Feature Glyma10g05470

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4250453
stop:	4255497
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12130	AT	Annotation by Michelle Graham. TAIR10: integral membrane TerC family protein \| chr5:3919613-3922154 FORWARD LENGTH=384	SoyBase	E_val: 6.00E-147	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
PF03741	PFAM	Integral membrane protein TerC family	JGI		ISS
UniRef100_Q9FMP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Similarity to transmembrane transport protein n=1 Tax=Arabidopsis thaliana RepID=Q9FMP9_ARATH	SoyBase	E_val: 1.00E-145	ISS
UniRef100_UPI000233AC47	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AC47 related cluster n=1 Tax=unknown RepID=UPI000233AC47	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05470

Paralog	Evidence	Comments
Glyma13g19821	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g047600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05470

Limit To All Plant Sequences

>Glyma10g05470.2   sequence type=CDS   gene model=Glyma10g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTGGCCTCTGTTGTCCACAACGGCGTCCGAATTCCATTCAACTTGGAGCACATTCACACTCCTCCTTTCAGATGCTCTGCACTTCACCACCCCATCTCTTCCTTTTGCTCAGAAGTAAAGAGGATTAGTGCTCAACAAAATGATGACATAGGCAAAGTTGAGAAATCTCCCACTCAGGAATCTCTGGGAAATGAAGATTACAGTTCCTCCGTTAGAACTGTAGCATTATGGGTGTGCACTGCAGTGGCATTTGGTGTTGGTTTGGGTTTTAAGGAGGGTTTTGACAAGGCATCCGAATTCTTTGCTGGGTATATATTGGAGCAAAGTCTTTCTGTAGATAATCTCTTTGTCTTTGTTCTAATATTCAATTACTTCAAAGTGCCAGTTGCATATCAGAATCGTGTGCTTTCCTATGGTATTGCTGGTGCAGTTGTATTTCGCCTGACATTAATACTTATTGGAACAGCCACCCTGCAGAGATTTGAGGCAGTCAACCTTCTCTTGGCTGCAATTTTACTCTTCTCATCATTTAAGCTATTTGCCAGTGAAGAAGATGAGTCTGACTTATCTGATAACTTTGTGGTGAAGACATGTCAGAAATTTATCCCTGTAACAACGTATTATGATGGAAATCGATTCATAACAAATCTGGATGGGGTGTGGAAGGCCACCCCTTTGCTTCTTACTGTAGCTGTTATCGAGCTCAGTGACATTGCATTTGCGGTTGACTCAATACCTGCAGTTTTTGGTGTAACACGGGATCCATTTGTAGTCTTTACGTCTAATCTTTTTGCCATTTTGGGTTTAAGGTCACTTTTCTTAATAATTTCTGAGGGTATGTCAGAGTTGAAGTACTTACAGCCGTCCATTGCTATCGTTCTGGGATTTGTTGGGGTTAAGATGATCCTCGACTATTTTGGATTCCATGTCTCAACGGAGGCATCTCTTGCTTTTGTAGCCTCAAGTCTTACCATTGGAGTGGTATTAAGTCTGGCTAACAAGTCTGATTAG

Predicted protein sequences of Glyma10g05470

Limit To All Plant Sequences

>Glyma10g05470.2   sequence type=predicted peptide   gene model=Glyma10g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLASVVHNGVRIPFNLEHIHTPPFRCSALHHPISSFCSEVKRISAQQNDDIGKVEKSPTQESLGNEDYSSSVRTVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVAYQNRVLSYGIAGAVVFRLTLILIGTATLQRFEAVNLLLAAILLFSSFKLFASEEDESDLSDNFVVKTCQKFIPVTTYYDGNRFITNLDGVWKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFVVFTSNLFAILGLRSLFLIISEGMSELKYLQPSIAIVLGFVGVKMILDYFGFHVSTEASLAFVASSLTIGVVLSLANKSD*

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