Glyma10g05420 - SoyBase

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Report for Sequence Feature Glyma10g05420

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4202722
stop:	4205007
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37330	AT	Annotation by Michelle Graham. TAIR10: aluminum sensitive 3 \| chr2:15669190-15670172 FORWARD LENGTH=273	SoyBase	E_val: 3.00E-151	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PF03649	PFAM	Uncharacterised protein family (UPF0014)	JGI		ISS
UniRef100_G7L0N3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein ALUMINUM SENSITIVE n=1 Tax=Medicago truncatula RepID=G7L0N3_MEDTR	SoyBase	E_val: 2.00E-171	ISS
UniRef100_I1L8P0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L8P0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g05420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g047100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05420

Limit To All Plant Sequences

>Glyma10g05420.1   sequence type=CDS   gene model=Glyma10g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCTTCTTCATGATAACACCATTTCAAAACCACACATTCCACCAGCATGTTTCCTTCACGGGAACGGATTTGTCATGGATGGTGGAGTTTCTGAAGGGCATGGTGAAGCCCGTGGCTGCCACCGCCGTCGTGCTTCTGGCCGTGCTCTTGTCCTTTATGCAGAAACTGGGACTCGAGGGTGAGATGGTGTATGCCATGTTCAGAGCATTTCTTCAGCTTTCTATTATTGGGTTTGTGTTGCAGTTCATATTCAACCAAGGCAACGCTGGCTGGATCATTCTAGCTTACCTTTTCATGGTGTGTGTTGCTGGTTACACTGCAGGTCAACGTGCGAAACATGTCCCTCGTGGGAAATATGTTGCTGGAGCTTCCATTCTGACAGGAACTGCAGTGACCATGTTCCTTCTAGTGTTACTAAACGTGTTCCCTTTCACCCCCAGATACATCATTCCAGTAGCAGGCATGATGGTCGGAAATGCCATGACAGTAACCGGTGTCACCATGAAAAGACTCCGCGACGACATCAAAGCACAAATGAACTTAGTAGAGACAGCATTGGCACTTGGTGCGAGTCCACGACAAGCTACGTATGAACAAGTGAAAAGGGCTTTGGTTATAGCCCTTTCACCTGTTGTGGACAACGCCAAAACAGTGGGTTTGATATCGCTGCCTGGGGCTATGACTGGTCTTATTATGGGAGGGGCTTCGCCACTTGAAGCCATTCAGCTACAGATTGTGGTGATGAATATGTTGATAGGTGCGTCCACTATCAGCAGCATAATGTCCACGTATCTATGCTGGCCAGCGTTCTTCACCAAAGCCTACCAATTAGAGACCCAAGTTTTCTCAAAGTGA

Predicted protein sequences of Glyma10g05420

Limit To All Plant Sequences

>Glyma10g05420.1   sequence type=predicted peptide   gene model=Glyma10g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESFFMITPFQNHTFHQHVSFTGTDLSWMVEFLKGMVKPVAATAVVLLAVLLSFMQKLGLEGEMVYAMFRAFLQLSIIGFVLQFIFNQGNAGWIILAYLFMVCVAGYTAGQRAKHVPRGKYVAGASILTGTAVTMFLLVLLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKAQMNLVETALALGASPRQATYEQVKRALVIALSPVVDNAKTVGLISLPGAMTGLIMGGASPLEAIQLQIVVMNMLIGASTISSIMSTYLCWPAFFTKAYQLETQVFSK*

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