Glyma10g05390 - SoyBase

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Report for Sequence Feature Glyma10g05390

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4184645
stop:	4185450
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02640	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr5:594334-594819 REVERSE LENGTH=161	SoyBase	E_val: 4.00E-41	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1L8N7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8N7_SOYBN	SoyBase	E_val: 5.00E-98	ISS
UniRef100_Q9LIW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Similar to an Arabidopsis thialiana chromosome BAC genomic sequence n=1 Tax=Oryza sativa Japonica Group RepID=Q9LIW0_ORYSJ	SoyBase	E_val: 1.00E-22	ISS

Expression Patterns of Glyma10g05390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05390

Paralog	Evidence	Comments
Glyma13g19750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g046800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05390

Limit To All Plant Sequences

>Glyma10g05390.1   sequence type=CDS   gene model=Glyma10g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCTGTGTGCTTATCAAAGTGTGTAAACGACGCACGTGACCCACGCGTGCCGGTACGTGCGACGTACGTGAACCTCTACAAGTGGCCGGAATCGGACGCGGAGTTTGTGAGGAGAAGGGGCGGTGGTTCGCACATGTGCGGCGGGCATCCGAGGGTGGTGGACAGCATCTCGTGCAGGCAGATGTACCTAAGAAGCTACAAATTTTCGAGGAAAGAGAGTGTGCCGGAGAAAACCCAGAAATGTTTTGGGAGGGTTAAGGAGAGAGTGAAGAAGCAGGGAAGGTCTCATCATGGGATTAGGAGAAGGAAGTGTTTGGTTTGGAGGAAAATGAGGGAAATTTCATGCGCTGCTTTGTTTAGGATTTTTCATAGGTTCTTGTCTTGCGGCGCTAGTGTAGATGTTGTCCATGCAAAATCTTGA

Predicted protein sequences of Glyma10g05390

Limit To All Plant Sequences

>Glyma10g05390.1   sequence type=predicted peptide   gene model=Glyma10g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSVCLSKCVNDARDPRVPVRATYVNLYKWPESDAEFVRRRGGGSHMCGGHPRVVDSISCRQMYLRSYKFSRKESVPEKTQKCFGRVKERVKKQGRSHHGIRRRKCLVWRKMREISCAALFRIFHRFLSCGASVDVVHAKS*

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