SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18520 | AT | Annotation by Michelle Graham. TAIR10: Lung seven transmembrane receptor family protein | chr5:6145027-6146349 FORWARD LENGTH=440 | SoyBase | E_val: 0 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0010015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root morphogenesis | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| KOG2569 | KOG | G protein-coupled seven transmembrane receptor | JGI | ISS | |
| PTHR21229 | Panther | LUNG SEVEN TRANSMEMBRANE RECEPTOR | JGI | ISS | |
| PTHR21229:SF2 | Panther | LUNG SEVEN TRANSMEMBRANE RECEPTOR | JGI | ISS | |
| PF06814 | PFAM | Lung seven transmembrane receptor | JGI | ISS | |
| UniRef100_B9SG95 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lung seven transmembrane receptor, putative n=1 Tax=Ricinus communis RepID=B9SG95_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L8N6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8N6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g05370 not represented in the dataset |
Glyma10g05370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g19740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g046600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g05370.1 sequence type=CDS gene model=Glyma10g05370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCATAACCGCCTCCACCAATGCCGTCGCCACCCTCCTCCTCCTCTTCTTCTTCATTTCCCCTTCAGCCGCAGAGATCAAAACCCTCACCATAACCTCCGACACCCGCCCCATGATCCTCTTGGAGAAATTCGGCTTCACCCACACCGGCCACGTGTCGATCTCTGTCTCCTCCGTCTTCGTGGTGGCCTCAGGTGGGTCCCAACCCGATCCCTCCCGATTAGGGTTCTTTCTCCTGAGCGAAGAGTCCCTCCTGCAAGTCCTGATCGAGATCCAGCAAAACCCTAGCTTCTGCGTCCTCGACTCCCGCTACACCACGCACCTCTTCACCTTCCGCGAACTCTCTCCTCCACCCTCCGCCTCCGCCAACCACACCTCCCCCGTCACAATCCCCAACGAATACTCCCTCTTCTTCGCCAACTGCGCCCCCGAAACCTCCGTCTCCATGCTCGTCCACACCGAGCTCTACAACCTCGACGCCGACTCCGAACACTCCCGCGATTACCTCTCCGCCGGCCAGACCCAACTCCCCACTCTCTACTCTCTCTTCTCCTTCGCCTACTTCGCCTTCCTCGCCCTCTGGATATACATCTGCTACTCCAACAAGCTCTCCCTCCACCGGATCCACCTCCTCATGGCGGCGCTCCTCCTTATGAAGGCCCTCAACCTCCTCTCCGCCGCCGAGGACAAGCACTACGTCAAGGTCACCGGAACTCCCCATGGCTGGGATGTCCTCTTCTACATCTTCCAGTTCTTCCGCGTCGTCCTCCTCTTCACCGTCATCGTTCTCGTCGGCACCGGCTGGTCCTTCCTCAAACCCTTCCTCCAGGAGCGCGAAAAGAAGGTCCTCATGATCGTCATCCCTTTACAAGTCCTCGCTAATGTGGCTTCCGTCGTCATCGGCGAAACGGGGCCCTTCATCAAGGATTGGGTTACTTGGAATCAGGTTTTCTTGCTCGTCGACATTATTTGCTGCTGCGCCATCATTTTCCCTATTGTCTGGTCCATCAGATCTCTCAGGGAAACCTCCAAGACCGATGGGAAGGCCGCGAGAAACCTCGCCAAGTTGACCCTCTTCAGGCAATTCTACATTGTTGTCATTGGGTACTTGTACTTCACCCGCATTGTGGTCTTTGCTTTGAAGACCATTGCCGCTTATAAGTACCAGTGGGTGAGTAATCTAGCTGAGGAGGCCGCCAGCCTCGCGTTTTATGTCGTCATGTTTTATATGTTTAGGCCTGTGGAGAGGAATGAGTACTTTGTGCTCGATGAGGAGGAAGAAGAGGCCGCGGAGATCGCGCTCAGGGATGAAGAATTTGAGCTTTGA
>Glyma10g05370.1 sequence type=predicted peptide gene model=Glyma10g05370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGITASTNAVATLLLLFFFISPSAAEIKTLTITSDTRPMILLEKFGFTHTGHVSISVSSVFVVASGGSQPDPSRLGFFLLSEESLLQVLIEIQQNPSFCVLDSRYTTHLFTFRELSPPPSASANHTSPVTIPNEYSLFFANCAPETSVSMLVHTELYNLDADSEHSRDYLSAGQTQLPTLYSLFSFAYFAFLALWIYICYSNKLSLHRIHLLMAALLLMKALNLLSAAEDKHYVKVTGTPHGWDVLFYIFQFFRVVLLFTVIVLVGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNLAEEAASLAFYVVMFYMFRPVERNEYFVLDEEEEEAAEIALRDEEFEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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