Glyma10g05320 - SoyBase

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Report for Sequence Feature Glyma10g05320

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4138562
stop:	4147625
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09560	AT	Annotation by Michelle Graham. TAIR10: Lipin family protein \| chr3:2934953-2938673 REVERSE LENGTH=904	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008195	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidate phosphatase activity	SoyBase	N/A	ISS
KOG2116	KOG	Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism	JGI		ISS
PTHR12181	Panther	LIPIN	JGI		ISS
PTHR12181:SF4	Panther	LIPIN 3-RELATED	JGI		ISS
PF04571	PFAM	lipin, N-terminal conserved region	JGI		ISS
PF08235	PFAM	LNS2 (Lipin/Ned1/Smp2)	JGI		ISS
UniRef100_G7L0Q2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidate phosphatase LPIN3 n=1 Tax=Medicago truncatula RepID=G7L0Q2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L8N4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8N4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05320

Paralog	Evidence	Comments
Glyma13g19730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g046400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05320

Limit To All Plant Sequences

>Glyma10g05320.1   sequence type=CDS   gene model=Glyma10g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTGGTAGGCAAAGTTGGAAGCTTGATAACTCAAGGTGTCTACTCAGTTGCTACACCTTTTCACCCCTTTGGTGGGGCTGTTGATGTGATTGTTGTTCAGCAACAAGATGGGACATTTCGAAGCACGCCTTGGTATGTTCGGTTTGGTAAATTTCAGGGTGTACTCAAAGGTGCCGAGAAGTTTGTTAGGATAAATGTTAATGGTGTTGAGGCCAATTTTCACATGTATCTTGACAATTCGGGGGAGGCTTATTTTTTGAAGGAGGTGGATGATGATAAAGTAGTTGATTCAATTGAGGCTGTTCAAGATTCTATTGACAAAAAGAATGGCTATTTGAGTAATGTTCATAGACTTGATCATAGCATCTCGGATTCTGGGGTGCTTCAGTTGAAAGATGAGAGTGATTCCTTGGTTTTGCCTCAACTTCAAAGGGCAGAATCTGATGTTGATAGGAGGTTTTATGAATTCCCGGATGATCGATCTTCTTTAGAAGATTCAGTTGAGTTGTCGGAATATGAGTCTAATTCGTATGAGAGCCTAGAGGGAGACAATTTTGGGGAGTCACAGGGTTCACATCCAGAGATGGTCTTGGTGAGTGTTGATGGTCATATATTGACTGCCCCTATCTCAGAATCAGAGCAGACTGAGGAGAATGTGCAGTTAAAAACTCCTCAATTTCATCTGGGACCAGGTGAAGAGACTGACTTATGTGAAGGCAACGGAGAGTTTAGTACTGGTGAAAGTGCTTGGGCTGCTGATTATATTAATCAGTTGGGTGCTCAAACAACTAATGTCCAATCTAGACGTTGTGACACTAACGGTGATGATAATACTTCTAAGCTTTTGCTTGAAGTTTGTCAAGGAGAGGAGGCACATATTTGTCTAGCACAGGATACCGTGGAGATTAAAAATCAAGAAGATCATATGAAAACTGATTCAGAAGAGGCTGCATCAGGTATCAAGAGGGAGAATGTTTTCAAAAGTTGTTTGGAGCTACAAGATTTTGGTCAGCAGGCTGGAAATGCTGATTTACAAAATATAGGTTCTTCATTGAAGATTCAAAATTCAGTAGAGGAATCTAATGCAAGTCATCCTGCAGTTGATGAAAATGAACAGGAGAGCATTGCAATATCTAAAAACGGTGATGAGTTATCACCTCCTAGTGGTTCTGCTTCTTCTAATGGCCATAGATCACCAAAATCAGAGTTGGAAACTCAAGAGGTTGAGAAAAATGCATCAGGAGAAGTTGAAACTGCTTCTGGCTCTCATTCTGTCACTACTTATAGTGAACAGAATGATGAACACGTTGACAAGACAGTAACAAATGATGAGTTAGATGATAATCAACAAACCCCTGCACTCAAAGATGTTAGGGCTACAAGTGAGGTGGTGGAGCCTCAAACAGAAACTTCCAATAAAGGGGATCAAAGCCATTTGGGTTTGGGATTTGAGATCTCCCTTTGTGGTCATGAACTTAAGGTGGGCATGGGTTCAGTAGCTGCTGCTGAAGCGTTTGAAGCACATCGCATATCCGTAGTTGACTTCACAAGTTCTGCTCCATCAATAATTAAAAATCAAAATCTTGTTATCAAGTTTAAAGAGAGGTACATGACGTGGGAAAAGGCTGCTCCTCTTGTTCTTGGAATGGCTGTTTATAGTTTAGATTTACCTGTTGAGTCCAAAGATACAATTCCTGTGGAACAGGATCATGCATTGAAGTCCAGGGATGATGATCTGGGATCATCTTCGTCTGGACGCAGATGGAGACTTTGGCCTATTCCTTTTCGAAAGGTCAAAACATTTGAGCATACTAATAGCAACTCATCAAATGAGGAGGTATTTCTAGATTCTGAGTCTGGATCTCTGATAGAACCAACTCCAGCATCCAGTACCCAGGGATCTCCTCATAAGCAATTTCTAAGAACAAATGTTCCCACTACCAAGCAGATAGCATCCTTAAATCTCAAAGAGGGTCAAAATTTGGTAACCTTCAGTTTCTCTACAAGGGTTCTCGGAACACAACAGGTTGATGCTCATATTTATTTATGGAAGTGGAATGCAAGAATTGTAATTTCAGACGTTGATGGAACTATTACAAAGTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAGGAAAATGGATACCAACTACTTTTTCTGAGTGCCCGTGCAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAACAGGATGGAAAAACCTTACCAAATGGACCTGTTGTTATATCACCTGATGGATTATTTCCCTCGCTTTACCGAGAAGTGATAAGAAGAGCACCTCACGAGTTCAAGATTGCTTGTTTAGAGGATATCAAAAGACTTTTCCCATCTGACTATAATCCATTCTATGCTGGATTTGGCAATAGAGATACAGATGAACTTAGTTACAGAAAGATTGGAATCCCGAAGGGCAAAATATTTATTATCAACCCTAAGGGTGAGGTAGCTATTAGTCAGCGTATCGGCGCAAAGTCGTATACATCATTACATACCCTCGTCAATGACATGTTTCCACCAACTTCTTTGGTCGAGCAGGAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGATTAG

Predicted protein sequences of Glyma10g05320

Limit To All Plant Sequences

>Glyma10g05320.1   sequence type=predicted peptide   gene model=Glyma10g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVVGKVGSLITQGVYSVATPFHPFGGAVDVIVVQQQDGTFRSTPWYVRFGKFQGVLKGAEKFVRINVNGVEANFHMYLDNSGEAYFLKEVDDDKVVDSIEAVQDSIDKKNGYLSNVHRLDHSISDSGVLQLKDESDSLVLPQLQRAESDVDRRFYEFPDDRSSLEDSVELSEYESNSYESLEGDNFGESQGSHPEMVLVSVDGHILTAPISESEQTEENVQLKTPQFHLGPGEETDLCEGNGEFSTGESAWAADYINQLGAQTTNVQSRRCDTNGDDNTSKLLLEVCQGEEAHICLAQDTVEIKNQEDHMKTDSEEAASGIKRENVFKSCLELQDFGQQAGNADLQNIGSSLKIQNSVEESNASHPAVDENEQESIAISKNGDELSPPSGSASSNGHRSPKSELETQEVEKNASGEVETASGSHSVTTYSEQNDEHVDKTVTNDELDDNQQTPALKDVRATSEVVEPQTETSNKGDQSHLGLGFEISLCGHELKVGMGSVAAAEAFEAHRISVVDFTSSAPSIIKNQNLVIKFKERYMTWEKAAPLVLGMAVYSLDLPVESKDTIPVEQDHALKSRDDDLGSSSSGRRWRLWPIPFRKVKTFEHTNSNSSNEEVFLDSESGSLIEPTPASSTQGSPHKQFLRTNVPTTKQIASLNLKEGQNLVTFSFSTRVLGTQQVDAHIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVARLFCAIKENGYQLLFLSARAIVQAYLTRNFLLNLKQDGKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKRLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISQRIGAKSYTSLHTLVNDMFPPTSLVEQEDYNSWNYWKTPLPDID*

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