Glyma10g05310 - SoyBase

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Report for Sequence Feature Glyma10g05310

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4124804
stop:	4134471
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37370	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr2:15679273-15682932 FORWARD LENGTH=669	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9FNB7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAC98056.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FNB7_ARATH	SoyBase	E_val: 1.00E-169	ISS
UniRef100_UPI000233CAF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CAF9 related cluster n=1 Tax=unknown RepID=UPI000233CAF9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05310

Paralog	Evidence	Comments
Glyma13g19705	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g046300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05310

Limit To All Plant Sequences

>Glyma10g05310.1   sequence type=CDS   gene model=Glyma10g05310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATGGGTAAGATCAGCGGTGAACAAAGCGGTGGAAGGTGGCCAGAGAAATATCGGACGTGCCGTTCGCACCTACGCCGACTCCGTCATGGTCCATGCAAGCAACGCCGTCGCTGGCGGTGCCAGAATCATCCAGGATCGCATTGTGGCTCGGAATATGCAAAATTTTAAGCACACTGTAAAACGGTTAGAAGAGGTTTCTGTTTCGTGTAGAGGGATAGAGAGAGTACAGTTGCTAAGAAGGTGGTTGGTTGCGCTTAGAGAAGTTGAGAGACTTACTCTTACCCGCACTGACTCCAATGCTAAAGATCAAGACAACGAATTTCTTAATGATGAATCCAAGGATTTACCTACACAACAACCCACTTTGATTTACTATGTAGACCCTGCTGCTCCGGGTGAACTGAAAAATTTTGGCGATGTCTTTCTTTCCAGTCAAGCTCTTGAGGGCATATCATTGTCAATGATTCTTGATGCACCAAATGAGGAAGAAGTTTCACTACTTTCAGAGATATATGGGCTCTGTATTAAAGGAGGAAAGGAAGAACATACTGCCTTGTTATCCAGTGTACAGGAATTGGCAAAAGCATTTTCTGGATATGAAGATGAAGTGCTGGCAAAGCGAGAAGAGTTACTTCAATATGTCCAATGTGCAATTTCAGGGCTGAAAGTAAATGCTGATCTTATGAGCATAGAAGTTGAAGCATGCAAGCTGAAGGAAAAAATTGAGAATATGAAGGCAGTCAACGAAGATGGAAATTTTGTAAATTCACCTAAATCAACTGTAGCAATAGAGGCTCTTGATGAAGCTATGGAAAAAATTCAAATGTGTTCTACGTTGGAGGAACTCTTGCTGAAAAAGAAATACTTTAGCTATGGTGATTCTCCACAACTTCATGCTGAAAAGGTTGACAAATTGAAACTTTTGTCAGAGTCTCTTGTAAATTCTACCACAAAAGCTGAGACTCACATTTCAGAAAACAGATCTCAAAAAGAAGAAGCACTTCATTTTCGGGTAACTAAATCCAACGAGGTTAGCCAAGTTGAAAAGGAATTAGCTGTGGAGATCGGAGAACTTGAGAAGCAGAAAGATGAGCTTGAAGACAGACTGAAAAAGGTCAACAGCTTGTTGACATCTGCACGGATGCGCCTCCACAATGCAAAAGAAGAAAGAGAGCAGTTTGATGAAGCAAGCAAAGAAATTATTGCACTTTTAAAAACAAAGGAAGATGAGATGGTGCGGGCCATTACTTCTTATACGGTGGAAGCCAGTGTTGTTGATGCATGGATCAAATTTCTGGAGAGCACATGGGATTTTCAAGCTTCACATACAAAGAGAAAGGAGGAGCAGGTCAAAACTGAACTGGAGAGACATGGTGATCATTTTGTGAATTTGGTGGTTCATCTTCTGTATTCTTACAAGGAAAAATTGGGTTTATCTGTTACTCAAATAAGAATACTTGTGGAGAATTTAAGATCCAGTCAAGGGTTAGCAATATCAACAGCAGCAGACAATGAAGGTTTGAAATTAGTGAGTCCAAGAAAGAAACTTGAAGAAGAATACTTGGATATCGAATCCAAGTTTTTAGCCACTCTGAATATAGTGGACACCATGAAGAAGCAGTTTCACATTCAAAAGGAAGGCATTTTCAGAAAAGACATTGACAAGGTTGCAGAACTGTTTGATGCCATTGAGAAAATAAAAGGCGAATTTGAGTCTATTGAAAGGCCAAAACTGGAACTTGAGAGTACAACTGCAAGGTCTGAAACACCATCAAGTCAAGTAACCTCCATAACTCCTTCACCTCCCTCCATGGCTAATAAACACAAGCAAGATGGACTGATCAACTCTCCCTCAATCACTGGAAGATCACAAATAGGAATAGAACTTGATAAATTAAGCGAAGATGACTCGGAAGAAGAGATATGTGAGTGGGAGTTTGATGCTCTTGACAAAGATCGTCACTCCAGGAGTTGA

Predicted protein sequences of Glyma10g05310

Limit To All Plant Sequences

>Glyma10g05310.1   sequence type=predicted peptide   gene model=Glyma10g05310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWVRSAVNKAVEGGQRNIGRAVRTYADSVMVHASNAVAGGARIIQDRIVARNMQNFKHTVKRLEEVSVSCRGIERVQLLRRWLVALREVERLTLTRTDSNAKDQDNEFLNDESKDLPTQQPTLIYYVDPAAPGELKNFGDVFLSSQALEGISLSMILDAPNEEEVSLLSEIYGLCIKGGKEEHTALLSSVQELAKAFSGYEDEVLAKREELLQYVQCAISGLKVNADLMSIEVEACKLKEKIENMKAVNEDGNFVNSPKSTVAIEALDEAMEKIQMCSTLEELLLKKKYFSYGDSPQLHAEKVDKLKLLSESLVNSTTKAETHISENRSQKEEALHFRVTKSNEVSQVEKELAVEIGELEKQKDELEDRLKKVNSLLTSARMRLHNAKEEREQFDEASKEIIALLKTKEDEMVRAITSYTVEASVVDAWIKFLESTWDFQASHTKRKEEQVKTELERHGDHFVNLVVHLLYSYKEKLGLSVTQIRILVENLRSSQGLAISTAADNEGLKLVSPRKKLEEEYLDIESKFLATLNIVDTMKKQFHIQKEGIFRKDIDKVAELFDAIEKIKGEFESIERPKLELESTTARSETPSSQVTSITPSPPSMANKHKQDGLINSPSITGRSQIGIELDKLSEDDSEEEICEWEFDALDKDRHSRS*

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