Glyma10g05300 - SoyBase

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Report for Sequence Feature Glyma10g05300

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4119325
stop:	4120737
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39370	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). \| chr2:16444280-16445266 REVERSE LENGTH=328	SoyBase	E_val: 2.00E-31	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1L8N2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8N2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O80624	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable membrane-associated kinase regulator 4 n=1 Tax=Arabidopsis thaliana RepID=MAKR4_ARATH	SoyBase	E_val: 1.00E-28	ISS

Expression Patterns of Glyma10g05300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05300

Paralog	Evidence	Comments
Glyma13g19680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g046200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05300

Limit To All Plant Sequences

>Glyma10g05300.1   sequence type=CDS   gene model=Glyma10g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATTGAAATGGCCACAAAACAAGTTACTACTACTATGGTTCATGTAGATGATGATGACTACATTGACATGGAACTATGTAATTCCTCCCCAAATTTCTTCTCTTATTCCCTTAGCTCTCCACCATCCAACAGAGAGTTTGAATTCCAAATGAGTGAGAAAGAGTCATTAACTTCTCCAGCTGATGATCTCTTCTACAAGGGAAAACTCCTTCCTCTTCACCTTCCCCCTCGTTTGCAAATGGTTCAAAAGCTCGTTGAAAACTCCTCCACCAATGCCAAATTTGAGTACATCAAATCAGATTCACCTTCAACAAATGCCAACACCCCTTTTGAATCCAACATCTCTCCTTCAGAATCACGCCGTGTGAGCAGTGATGTGAGCCCAAATGAATACCAACTTGGGTGGTTTTCTGACATTAACAAGTACAACCTTAGTGGTGGTGATCTTCCTAAGAAGTCTTTGCCCAAGAAACTGAAACAGATGAAGCAGTTCTGGCTTGGCCTGAGACTCAAGGCCTCAAGGGCTTACCTGAAAACCTTGTTCAACAAATCTGGTTGCTCAGACAAGTTTTGTGCCAGTGCTGCAAGCAACAACAACATGGGAGCGGAGAAGAAATCATTAAAGTGCAAAGAGTGTCAGAACAAGTACATGAAGGTTGCAAGGAGAAACCCTTTTGAGAGTTTCTATGATAGCAAGGACCAGGCAACTTGTTCTGTCGTGAAGAGCATCAGAAGAGAGATGCTTGAAGTTGTTGAAGATGATTTCTGTGACCACAGGAGGTCTTTCTCTGGGGTTGGTCAACGACATTGTTCCACAAAGGCTTCATCTTTGTCCACATCTTCATCAGGGTCATCTTCTTCATCTTCTTCTTTTTCTTTTAGCTCAGCTGGGTACTATGATTTGCAACTTTTCAAGAGGAGCATCAGTGCCAATTATGAGTTGGAAAGTTCAATCCAGGGAGCCATTGCTCATTGCAAGCAGTCTCAGCAGCAGTGTGGTTCAAAGAATGGTTCAGATGATAGAAGGATTTGTTCTCAATTTGCAACAAAAATGCAGTTGGTGAGAGTTAATGAATAG

Predicted protein sequences of Glyma10g05300

Limit To All Plant Sequences

>Glyma10g05300.1   sequence type=predicted peptide   gene model=Glyma10g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIEMATKQVTTTMVHVDDDDYIDMELCNSSPNFFSYSLSSPPSNREFEFQMSEKESLTSPADDLFYKGKLLPLHLPPRLQMVQKLVENSSTNAKFEYIKSDSPSTNANTPFESNISPSESRRVSSDVSPNEYQLGWFSDINKYNLSGGDLPKKSLPKKLKQMKQFWLGLRLKASRAYLKTLFNKSGCSDKFCASAASNNNMGAEKKSLKCKECQNKYMKVARRNPFESFYDSKDQATCSVVKSIRREMLEVVEDDFCDHRRSFSGVGQRHCSTKASSLSTSSSGSSSSSSSFSFSSAGYYDLQLFKRSISANYELESSIQGAIAHCKQSQQQCGSKNGSDDRRICSQFATKMQLVRVNE*

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