Glyma10g05290 - SoyBase

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Report for Sequence Feature Glyma10g05290

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4100754
stop:	4103791
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55140	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr3:20438819-20440225 FORWARD LENGTH=331	SoyBase	E_val: 4.00E-151	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0030570	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectate lyase activity	SoyBase	N/A	ISS
PF00544	PFAM	Pectate lyase	JGI		ISS
UniRef100_B9SLB1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectate lyase, putative n=1 Tax=Ricinus communis RepID=B9SLB1_RICCO	SoyBase	E_val: 1.00E-152	ISS
UniRef100_I1LYX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LYX1_SOYBN	SoyBase	E_val: 3.00E-179	ISS

Expression Patterns of Glyma10g05290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05290

Paralog	Evidence	Comments
Glyma13g19670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g046100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05290

Limit To All Plant Sequences

>Glyma10g05290.2   sequence type=CDS   gene model=Glyma10g05290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAACGCTCATCATTCACAATGGCATCGCAAACACGGTAACTCCGTTCTTCCGCCCCATAAATACAATCCTCAGCCACCACCAACCACCTCCAATTCCAACATGCTTTCTCTTCCTTACACCCACGTCGACACCACTCTCCGCTCCCTCGCCGCCCAAGCCGAGGGCTTCGGTCGCTTCGCCATCGGCGGCCTCCACGGTCCCCTTCACCACGTCACATCTCTCGCAGATGATGGACCGGGGTCGCTGCGTAACGCGTGTCGCCGAAAAGAACCGCTGTGGATTGTGTTTGAGGTTTCCGGCACCATTCAACTCTCCTCCTACTTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATCAAACTCAGCGGAAAAGGCTTGCGGCTGAAGGAATGCGAGCACGTGATAATTTGTAATCTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGACGCCATTCAGATCAAACCTAATTCCAAGCACATATGGATTGATCGTTGCACGCTTAGTGATTTTGATGATGGGCTCATAGATATCACCCGAGAAAGCACAGACATTACTATTTCAAGGTGTCACTTCTCCCAGCATGACAAAGCCATGCTCATTGGGGCTGATCCCTCGCATGTTGGAGATAGGTGCATGAGGGTGACCATACACCATTGTTTTTTCAATGGGACTCGACAGAGGCAACCTCGTGTTAGGTTCGCAAAAGTGCATCTGTACAACAATTATATCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGACAGAAAAAGTTGGCATTAAGTACCTTACTGAGCAGGCAGCAGACAAGGAAGTGGGAGCAACTGGTACCATAA

Predicted protein sequences of Glyma10g05290

Limit To All Plant Sequences

>Glyma10g05290.2   sequence type=predicted peptide   gene model=Glyma10g05290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNAHHSQWHRKHGNSVLPPHKYNPQPPPTTSNSNMLSLPYTHVDTTLRSLAAQAEGFGRFAIGGLHGPLHHVTSLADDGPGSLRNACRRKEPLWIVFEVSGTIQLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISRCHFSQHDKAMLIGADPSHVGDRCMRVTIHHCFFNGTRQRQPRVRFAKVHLYNNYIRNWGIYAVCASVESQIFSQHNIYEAGQKKLALSTLLSRQQTRKWEQLVP*

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